Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq455 100 2e-16 seq2803 95.1 1e-14 seq782 95.1 1e-14 seq36 82.4 7e-11 >seq455 Length=15778 Score = 100 bits (110), Expect = 2e-16 Identities = 164/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || |||||||||||| | || | || || ||||| || Sbjct 239 CCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGA 180 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| || || || || || ||||| || ||||| || || || | Sbjct 179 GCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACC 120 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATT 27162 | ||||| | || | || || || || |||| || | || || || | || | Sbjct 119 AGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCG---CGGACT 63 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| || ||||||||||| | || |||| | ||| |||| || ||||| Sbjct 62 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGCAT 8 >seq2803 Length=585 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || | || || ||||| | Sbjct 244 CGGCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGC 185 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 184 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 125 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGA 27160 || ||||| | || | || || || || |||| || | || || || | || Sbjct 124 CCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCG---CGGA 68 Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || ||||||||||| | || |||| | ||| |||| || ||||| Sbjct 67 CTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGCAT 11 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || | || || ||||| | Sbjct 472 CGGCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGC 413 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 412 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 353 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGA 27160 || ||||| | || | || || || || |||| || | || || || | || Sbjct 352 CCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCG---CGGA 296 Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || ||||||||||| | || |||| | ||| |||| || ||||| Sbjct 295 CTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGCAT 239 >seq782 Length=7656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || | || || ||||| | Sbjct 7641 CGGCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGC 7582 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 7581 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 7522 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGA 27160 || ||||| | || | || || || || |||| || | || || || | || Sbjct 7521 CCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCG---CGGA 7465 Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || ||||||||||| | || |||| | ||| |||| ||||| || Sbjct 7464 CTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGTAT 7408 >seq36 Length=60674 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| | || | || || || || || Sbjct 7037 CATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAG 7096 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || || || || ||||| || ||||| || || || || Sbjct 7097 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 7156 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || || | || | | || ||||| Sbjct 7157 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAA 7216 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| |||||||| || Sbjct 7217 CATTCAGAAGGAGTCCAC 7234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434902079687040