Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq518 122 6e-23 >seq518 Length=13848 Score = 122 bits (134), Expect = 6e-23 Identities = 395/609 (65%), Gaps = 12/609 (2%) Strand=Plus/Plus Query 27129 GAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG 27188 |||||| || ||||| |||||||| | | ||| ||||| ||||| ||||| ||||| Sbjct 5415 GAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTG 5474 Query 27189 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 27248 || | ||| || || | ||||| || | | || || | | || |||| | ||| Sbjct 5475 GATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTA 5534 Query 27249 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 ||||||||| ||||| || ||||| |||||||| | | |||||| ||| || Sbjct 5535 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 5594 Query 27309 CGAGAGCTC-TCCATC-----GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAG 27362 ||||| | | | | | ||||| ||||| | | | ||||||||| || || Sbjct 5595 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 5654 Query 27363 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 27422 ||||| | | | | |||||||| || | || | || | ||| |||| Sbjct 5655 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCG-CTGG 5713 Query 27423 GTTGTTCCTGATGAGGTCCACGGCGTTTTGC---AGCTGATCCACCCCCATCCCCGAGTA 27479 | | || | |||| | || || | || | ||| || || ||| | || ||| Sbjct 5714 GAT--TCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 5771 Query 27480 GTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGG 27539 || | | | | |||||| || || ||||| || | ||| ||||| ||||| || || Sbjct 5772 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 5831 Query 27540 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 27599 |||||||| |||||| |||| || ||| | |||| | ||| | | | || Sbjct 5832 CCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCC 5891 Query 27600 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 27659 |||| |||||||||| | | ||||| || | |||| || | ||| || ||| | Sbjct 5892 GTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCG 5951 Query 27660 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 27719 | |||||| | ||||||||| ||| | ||| ||||| | ||| ||||||||||| Sbjct 5952 CAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAG 6011 Query 27720 GGGAAACTG 27728 || | ||| Sbjct 6012 CGGCAGCTG 6020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369493680886262