Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq257 158 9e-34 seq2803 147 2e-30 seq782 145 5e-30 seq455 143 2e-29 seq36 125 5e-24 >seq257 Length=25438 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||| |||||| ||||||||||| || ||| Sbjct 22230 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22289 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||||| |||||||| || | ||| Sbjct 22290 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 22349 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| |||| | |||| | || |||||| | ||||| Sbjct 22350 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCTCCAC 22408 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | |||||||| || || || ||||||||||||||||||||| Sbjct 22409 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATG 22457 >seq2803 Length=585 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| ||||| |||||| ||||||||||| || Sbjct 10 CATGCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 69 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| || | || ||||||||||| || |||||||||| |||||||| || | Sbjct 70 CGCGAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGG 129 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| |||||| |||| | |||| | || |||||| | | Sbjct 130 AGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCT 188 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| | |||||||| || || || |||||||||||||| |||||| Sbjct 189 CCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 241 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| ||||| |||||| ||||||||||| || Sbjct 238 CATGCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 297 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| || | || ||||||||||| || |||||||||| |||||||| || | Sbjct 298 CGCGAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGG 357 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| |||||| |||| | |||| | || |||||| | | Sbjct 358 AGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCT 416 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| | |||||||| || || || |||||||||||||| |||||| Sbjct 417 CCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 469 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| ||||| |||||| ||||||||||| || Sbjct 466 CATGCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 525 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || | || ||||||||||| || |||||||||| |||||||| || Sbjct 526 CGCGAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTC 582 >seq782 Length=7656 Score = 145 bits (160), Expect = 5e-30 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| || ||||| || | || || Sbjct 7428 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTC 7487 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||||| |||||||| || | ||| | || ||||| ||| Sbjct 7488 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 7547 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | || |||||| | |||||||||| | ||||||| Sbjct 7548 GATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCT 7606 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || |||||||||||||| |||||| Sbjct 7607 TGCCGGTCAGCGTCTTCACGAAGATCTGCATG 7638 >seq455 Length=15778 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| ||||| |||||| ||||||||||| || Sbjct 7 CATGCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 66 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| || | || ||||||||||| || |||||||||| |||||||| || | Sbjct 67 CGCGAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGG 126 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| |||||| |||| | |||| | || |||||| | | Sbjct 127 AGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCT 185 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| | |||||||| || || || |||||||| ||||| |||||| Sbjct 186 CCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATG 238 >seq36 Length=60674 Score = 125 bits (138), Expect = 5e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||| ||||| |||||| |||||| || |||||||| || ||||| ||| | || Sbjct 7250 CAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCCTC 7191 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || ||||| | |||||||| || | || | || ||||| || Sbjct 7190 CTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 7131 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| ||||| |||| | ||||||||| | || ||||| | | |||| Sbjct 7130 CTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCG 7072 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| || || || |||||||||||||| ||||||||| Sbjct 7071 TCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATG 7034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977229076234