Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq257 143 6e-29 seq36 143 6e-29 seq2803 134 3e-26 seq782 134 3e-26 seq455 131 4e-25 >seq257 Length=25438 Score = 143 bits (158), Expect = 6e-29 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| |||||||| || || || || || |||||| |||| |||||||| ||| Sbjct 22453 CAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC--- 22397 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || ||||||||||||||| Sbjct 22396 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 22337 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || |||||||| || || | || || || || || ||| Sbjct 22336 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 22277 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 22276 ATCCAGAAGGAGTCCACGCTGCACCTGGT 22248 >seq36 Length=60674 Score = 143 bits (158), Expect = 6e-29 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| ||||| || || || |||||| |||||||||| || ||| Sbjct 7041 CAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC--- 7097 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| || ||||| |||||||| || || ||||| ||||||||| Sbjct 7098 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 7157 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || || |||||||| || || | || || || || || ||| Sbjct 7158 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 7217 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || ||||| || || Sbjct 7218 ATTCAGAAGGAGTCCACGCTGCACCTCGT 7246 >seq2803 Length=585 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| |||| |||||||| ||| Sbjct 237 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC--- 181 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || ||||||||||||||| Sbjct 180 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 121 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || ||||| || || || | || || || || || ||| Sbjct 120 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 61 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 60 ATCCAGAAGGAGTCGACGCTGCACCTGGT 32 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| |||| |||||||| ||| Sbjct 465 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC--- 409 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || ||||||||||||||| Sbjct 408 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 349 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || ||||| || || || | || || || || || ||| Sbjct 348 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 289 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 288 ATCCAGAAGGAGTCGACGCTGCACCTGGT 260 >seq782 Length=7656 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| |||| |||||||| ||| Sbjct 7634 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC--- 7578 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || ||||||||||||||| Sbjct 7577 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 7518 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || ||||| || || || | || || || || || ||| Sbjct 7517 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 7458 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 7457 ATCCAGAAGGAGTCGACGCTGCACCTGGT 7429 >seq455 Length=15778 Score = 131 bits (144), Expect = 4e-25 Identities = 155/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || ||||| || || || || || |||||| |||| |||||||| ||| Sbjct 234 CAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC--- 178 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || ||||||||||||||| Sbjct 177 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 118 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || ||||| || || || | || || || || || ||| Sbjct 117 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 58 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 57 ATCCAGAAGGAGTCGACGCTGCACCTGGT 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203684900736388