Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5767 143 6e-29 seq3519 143 6e-29 seq2484 136 8e-27 seq84 91.5 3e-13 >seq5767 Length=966 Score = 143 bits (158), Expect = 6e-29 Identities = 284/415 (68%), Gaps = 9/415 (2%) Strand=Plus/Minus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||| ||||||| ||||| ||| || |||||||| || ||| | ||| Sbjct 426 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGGCTCACCTTCAGCAAC 367 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAA- 230347 ||| ||||| ||||||||||| || || || | | |||| | || | || ||| Sbjct 366 GAGCTCATCTCGCGCGACGAGGGCCTGCA-CACCGACTTCGCCTGCCTGCTCTA--CAAC 310 Query 230348 AGC----TCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTT 230403 ||| || || ||||||| || |||| || ||||| || || || || Sbjct 309 AGCCACATCAAGCACAAGCTGCCCCGCGAGCGCGTGCTCGCCATCATCACCGACGCCGTC 250 Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCT 230463 | | ||| ||||||||||| || ||||| | || ||||| || ||||||||||| Sbjct 249 GTCATCGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCC 190 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 || || ||| | ||||||||||| ||||| ||||||||| | | || | || || | Sbjct 189 GACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTC 130 Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 ||||| |||||| | | |||||||| | || |||||| | || ||||| || Sbjct 129 GAGAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGC 70 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||||||||||||||| ||| ||| | || || |||| | | || || |||| Sbjct 69 AAGACCAACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGCGGGCGTCATGA 15 >seq3519 Length=2121 Score = 143 bits (158), Expect = 6e-29 Identities = 284/415 (68%), Gaps = 9/415 (2%) Strand=Plus/Minus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||| ||||||| ||||| ||| || |||||||| || ||| | ||| Sbjct 2109 TTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGCGTGATGCCCGGGCTCACCTTCAGCAAC 2050 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAA- 230347 ||| ||||| ||||||||||| || || || | | |||| | || | || ||| Sbjct 2049 GAGCTCATCTCGCGCGACGAGGGCCTGCA-CACCGACTTCGCCTGCCTGCTCTA--CAAC 1993 Query 230348 AGC----TCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTT 230403 ||| || || ||||||| || |||| || ||||| || || || || Sbjct 1992 AGCCACATCAAGCACAAGCTGCCCCGCGAGCGCGTGCTCGCCATCATCACCGACGCCGTC 1933 Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCT 230463 | | ||| ||||||||||| || ||||| | || ||||| || ||||||||||| Sbjct 1932 GTCATCGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCC 1873 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 || || ||| | ||||||||||| ||||| ||||||||| | | || | || || | Sbjct 1872 GACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTC 1813 Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 ||||| |||||| | | |||||||| | || |||||| | || ||||| || Sbjct 1812 GAGAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGC 1753 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||||||||||||||| ||| ||| | || || |||| | | || || |||| Sbjct 1752 AAGACCAACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGCGGGCGTCATGA 1698 >seq2484 Length=3244 Score = 136 bits (150), Expect = 8e-27 Identities = 182/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || || | | ||| ||||||||||| || ||||| | || ||| Sbjct 149 ATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGC 208 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||||| || || ||| | ||||||||||| ||||| ||||||||| | Sbjct 209 CTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTG 268 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || | || || |||||| |||||| | | |||||||| | || |||||| Sbjct 269 CTCGTGTCGCTCGGGCTCGAGAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAG 328 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 | || ||||| || ||||||||||||||||| ||| ||| | || || |||| | Sbjct 329 ATGATCTCGCTCACCGGCAAGACCAACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAG 388 Query 230626 CCTGGTGTGATGA 230638 | || || |||| Sbjct 389 GCGGGCGTCATGA 401 >seq84 Length=22863 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 || ||||||||||| || | | |||||||| ||||| |||| | | ||| || Sbjct 12420 AGCTTCGTGAAGATGTAGCGCGGTGCGGCGTGGTCGTTACCCAGCTGCTGACGCGAACCG 12479 Query 281796 AACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGG 281855 |||||||||||||||| | | ||| ||||| || | ||| | | | ||| |||| Sbjct 12480 AACTGACCCTCCGGCACGAGCAGGTTGATGTTGTTACCGCCGGTGAAGTTCTGCGCCATC 12539 Query 281856 TTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTG 281893 || ||||| ||| |||| ||||| ||||| |||||||| Sbjct 12540 TTCACGATGGTCTCCTGCAGCGACACCTCGCCGTGGTG 12577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057725331466400