Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3040 123 2e-23 seq3958 114 1e-20 seq5767 104 2e-17 seq3874 104 2e-17 seq3519 104 2e-17 seq2484 104 2e-17 seq3898 102 7e-17 seq207 102 7e-17 seq303 84.2 2e-11 >seq3040 Length=2570 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 945 CACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 1004 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| ||||||| |||||||| || || || |||||||||||||| Sbjct 1005 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1064 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||||||||||| || | ||| || Sbjct 1065 GATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTT 1124 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||| || || || || ||||||||| Sbjct 1125 GCCGGTCAGCGTCTTCACGAAGATCTGCATG 1155 >seq3958 Length=1797 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 459 CACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 518 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| ||||||| |||||||| || || || |||||||||||||| Sbjct 519 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 578 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||||||||||| || | ||| || Sbjct 579 GATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTT 638 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || || || || |||||| Sbjct 639 GCCGGTAAGGGTCTTCACGAAGATTTGCATG 669 >seq5767 Length=966 Score = 104 bits (114), Expect = 2e-17 Identities = 182/257 (71%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 44936 GGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCAC 44995 || ||||||||||| || || || |||||||| | || ||| | ||||| || |||||| Sbjct 396 GGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCAC 337 Query 44996 ACCAACTTTGCCTGCCTCTACTATAATA-CGAGAGTCGATCAAAAGTTG-GACGCGCCCA 45053 ||| |||| |||||||| ||| || | | | | || | || ||| || |||| | Sbjct 336 ACCGACTTCGCCTGCCTGCTCTACAACAGCCACA-TCAAGCACAAGCTGCCCCGCGAGC- 279 Query 45054 CCGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATT-TTTTGCTGAGGCT 45112 ||| || ||| || |||| ||||| | |||||||| ||| || | ||| || || Sbjct 278 GCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGC-GACGCG 220 Query 45113 CTGCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTC 45172 ||||||| | | || |||||||| | | ||||| ||||||| ||||| ||| Sbjct 219 CTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTC 160 Query 45173 GCCGATCGTCTTCTCGT 45189 ||||| || || ||||| Sbjct 159 GCCGACCGCCTGCTCGT 143 >seq3874 Length=1858 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||| ||| | || ||||| || || |||||||| || Sbjct 1596 TACCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1655 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||||||||| || || || |||| || |||||||| || |||| Sbjct 1656 CAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAG 1715 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| ||||| | ||| | Sbjct 1716 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 1775 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | | | ||| ||||||||||| || || || || ||||||||| Sbjct 1776 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1825 >seq3519 Length=2121 Score = 104 bits (114), Expect = 2e-17 Identities = 182/257 (71%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 44936 GGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCAC 44995 || ||||||||||| || || || |||||||| | || ||| | ||||| || |||||| Sbjct 2079 GGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCAC 2020 Query 44996 ACCAACTTTGCCTGCCTCTACTATAATA-CGAGAGTCGATCAAAAGTTG-GACGCGCCCA 45053 ||| |||| |||||||| ||| || | | | | || | || ||| || |||| | Sbjct 2019 ACCGACTTCGCCTGCCTGCTCTACAACAGCCACA-TCAAGCACAAGCTGCCCCGCGAGC- 1962 Query 45054 CCGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATT-TTTTGCTGAGGCT 45112 ||| || ||| || |||| ||||| | |||||||| ||| || | ||| || || Sbjct 1961 GCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGC-GACGCG 1903 Query 45113 CTGCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTC 45172 ||||||| | | || |||||||| | | ||||| ||||||| ||||| ||| Sbjct 1902 CTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTC 1843 Query 45173 GCCGATCGTCTTCTCGT 45189 ||||| || || ||||| Sbjct 1842 GCCGACCGCCTGCTCGT 1826 >seq2484 Length=3244 Score = 104 bits (114), Expect = 2e-17 Identities = 182/257 (71%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 44936 GGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCAC 44995 || ||||||||||| || || || |||||||| | || ||| | ||||| || |||||| Sbjct 20 GGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCAC 79 Query 44996 ACCAACTTTGCCTGCCTCTACTATAATA-CGAGAGTCGATCAAAAGTTG-GACGCGCCCA 45053 ||| |||| |||||||| ||| || | | | | || | || ||| || |||| | Sbjct 80 ACCGACTTCGCCTGCCTGCTCTACAACAGCCACA-TCAAGCACAAGCTGCCCCGCGAGC- 137 Query 45054 CCGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATT-TTTTGCTGAGGCT 45112 ||| || ||| || |||| ||||| | |||||||| ||| || | ||| || || Sbjct 138 GCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGC-GACGCG 196 Query 45113 CTGCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTC 45172 ||||||| | | || |||||||| | | ||||| ||||||| ||||| ||| Sbjct 197 CTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTC 256 Query 45173 GCCGATCGTCTTCTCGT 45189 ||||| || || ||||| Sbjct 257 GCCGACCGCCTGCTCGT 273 >seq3898 Length=1846 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| || | ||||| ||||| Sbjct 31 CACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 90 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| || |||||||| || ||||| |||||||||||||| Sbjct 91 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 150 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| || |||| | | ||| || Sbjct 151 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACTTCGAGCGCGATCGTCTT 210 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||||||| || || || ||||||||| Sbjct 211 GCCGGTCAGAGTCTTCACGAAGATCTGCATG 241 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||| | ||| | || ||||| || || |||||||| || Sbjct 1506 TACCACCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1565 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||||||||| || || || |||| || |||||||| || |||| Sbjct 1566 CAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAG 1625 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| ||||| | ||| | Sbjct 1626 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 1685 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | | | ||| ||||||||||| || || || || ||||||||| Sbjct 1686 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1735 >seq207 Length=16371 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || | ||||| ||||| Sbjct 16129 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 16070 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| || |||||||| || ||||| |||||||||||||| Sbjct 16069 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 16010 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| ||||| | | | ||| || Sbjct 16009 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 15950 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||| || || || || ||||||||| Sbjct 15949 GCCGGTCAGCGTCTTCACGAAGATCTGCATG 15919 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || | ||||| ||||| Sbjct 16357 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 16298 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| || |||||||| || ||||| |||||||||||||| Sbjct 16297 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 16238 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| ||||| | | | ||| || Sbjct 16237 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 16178 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||| || || || || ||||||||| Sbjct 16177 GCCGGTCAGCGTCTTCACGAAGATCTGCATG 16147 >seq303 Length=13852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 134125 TCTTTACGCGTTTCATGAATAGATCGGGAATCCACAGGCCGAGCATTAAATCGCGAGCTT 134184 |||| ||||| |||||||| |||||||| ||||| || || | | ||||| || Sbjct 11417 TCTTCACGCGCTTCATGAACAGATCGGGGATCCAGAGCGCGTAGAACAGGTCGCGCGCAC 11358 Query 134185 TAGTGTCTTCGGAGCCCATGTTGCGTCTCAAGTTGAGAAACTCATAAATTTCCGGATGCC 134244 ||| || ||| ||||||| ||| | |||||||| | || |||| |||| Sbjct 11357 GCTGGTCGTCCTTGCCGGTGTTGCGCTTCATGAGCAGAAACTCGAAGATGTCCGCGTGCC 11298 Query 134245 ACGGCTCGATGTAGGCGGCGAGGGCACCTTTTCGCTTA---CCACCCTGGTCGACGT 134298 ||||||||| ||| ||||| |||||| || |||||| || ||||| || |||| Sbjct 11297 ACGGCTCGAGGTACATGGCGAAGGCACCCTTGCGCTTACCGCCGCCCTGATCCACGT 11241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433791908397760