Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3958 118 1e-21 seq3898 113 5e-20 seq3874 113 5e-20 seq3040 113 5e-20 seq207 113 5e-20 >seq3958 Length=1797 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 477 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAA 536 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||||||| ||| || || | | Sbjct 537 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 596 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||||||| || || |||| | ||| || ||||| || || ||||| || Sbjct 597 CTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCAC 656 Query 43172 AAAGATTTGCATTTT 43186 ||||||||||| || Sbjct 657 GAAGATTTGCATGTT 671 >seq3898 Length=1846 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || |||||||| || || || Sbjct 49 CTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAA 108 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || || | | Sbjct 109 GATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 168 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||||||||| ||||| |||| || ||| || ||||| || || ||||| || Sbjct 169 CTCGATCGTGTCGCTCGCCTCCACTTCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCAC 228 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 229 GAAGATCTGCAT 240 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || |||||||| || || || Sbjct 1543 CTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAA 1602 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || || | | Sbjct 1603 GATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 1662 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||||||||| ||||| || | || ||| || ||||| || |||||||| || Sbjct 1663 CTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCAC 1722 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 1723 GAAGATCTGCAT 1734 >seq3874 Length=1858 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || || || || || | || || Sbjct 1615 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 1674 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || || ||||||||||| | || | || |||||||||| Sbjct 1675 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 1734 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | ||||||||||| ||||| || | || ||| || || Sbjct 1735 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 1794 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || |||||||| || ||||| ||||| Sbjct 1795 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 1824 >seq3040 Length=2570 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 963 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAA 1022 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || || | | Sbjct 1023 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 1082 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||||||| || || |||| | ||| || ||||| || |||||||| || Sbjct 1083 CTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCAC 1142 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 1143 GAAGATCTGCAT 1154 >seq207 Length=16371 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || || || || || | || || Sbjct 16129 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 16070 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || || ||||||||||| | || | || |||||||||| Sbjct 16069 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 16010 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | ||||||||||| ||||| || | || ||| || || Sbjct 16009 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 15950 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || |||||||| || ||||| ||||| Sbjct 15949 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 15920 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || || || || || | || || Sbjct 16357 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 16298 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || || ||||||||||| | || | || |||||||||| Sbjct 16297 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 16238 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | ||||||||||| ||||| || | || ||| || || Sbjct 16237 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 16178 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || |||||||| || ||||| ||||| Sbjct 16177 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 16148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571765564598400