Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq303 158 3e-33 seq638 84.2 5e-11 >seq303 Length=13852 Score = 158 bits (174), Expect = 3e-33 Identities = 556/849 (65%), Gaps = 26/849 (3%) Strand=Plus/Plus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | |||| ||||| | || || ||| | ||| | || |||||| | Sbjct 10889 CAGCACATGATTCTGCGTGTGGCGATTGGCATCCACGGCAAGGACCTCGACCGCGTGCGC 10948 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 || |||||| ||| | ||| | || ||||| ||||| || ||||||||| Sbjct 10949 CGCACCTACACCCTCATGTCCCAGGGCTTCTTCACCCATGCGACACCCACCCTCTTCAAC 11008 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| ||| ||| ||| ||||||||||||| || | || ||| | || ||| Sbjct 11009 GCCGGCACCCCCAAGCCCCAGATGAGCTCGTGCTTCCTGGTGGCGATGAAGGATGACAGC 11068 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGA 249132 | || ||||| || |||||||| || || || ||| || ||| ||||| Sbjct 11069 ATTGAGGGCATCTACGACACGCTCAAGGAGTGCGCCGTGATCAGCAAGGCCGCCGGCGGC 11128 Query 249133 ATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGG 249192 || || || ||| ||||||||| || ||| |||||| || || || || Sbjct 11129 ATTGGCATCCACGTGCACAACATCCGTGCCGCGGGCAGCTACATCGCCGGCACGAACGGC 11188 Query 249193 --GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC-ACCGCCAGGTTCATC 249249 ||| | || || | || | | || || | || | || ||| | | | | Sbjct 11189 ACGTCCA--ACGGCCTCATGCCGATGATCCG-TGTGTGGAATAATACGGCCCGCTACGTG 11245 Query 249250 AACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCC 249306 | |||| ||| | || ||||| | ||||||||||| | || ||||||||| Sbjct 11246 GATCAGGGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATGTACCTCGAGCCGTGGCACGCG 11305 Query 249307 GATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGT 249366 || || || ||||| ||| | |||| |||| |||||| || | | | ||||| Sbjct 11306 GACATCTTCGAGTTTCTGCTCATGAAGCGCAACACCGGCAAGGACGACCAGCGTGCGCGC 11365 Query 249367 GACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGC 249426 ||||| ||||||| || ||| || |||| |||||||| ||||| ||| ||| ||| Sbjct 11366 GACCTGTTCTACGCGCTCTGGATCCCCGATCTGTTCATGAAGCGCGTGAAGAGCGAGGGC 11425 Query 249427 GATTGGACGCTTCT-TTCTCCGTC-CGACGCCCCGGACCTCATCGATCTAC-ACGGCGCC 249483 | |||||| | | | || | |||||||| | ||||| ||| || | |||||| Sbjct 11426 AAGTGGACGTTGATGGACCCCAACACGACGCCC--GGCCTCAGCGA-CTGCTACGGCGAG 11482 Query 249484 GACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATCGGCAAG---ACAATCAAG 249540 | ||||| || ||| || | ||||| | || ||||| ||| | || ||| || Sbjct 11483 AAGTTCGAGCAGCTCTACGAGGACTACGAGGCGAAGGGCATGGGCGTGCGCACCATCCAG 11542 Query 249541 GCTC-GGA-CCCT-TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTAT 249597 || | ||| | || || || | | | ||||||||||| |||||||| | ||||| | Sbjct 11543 GCGCAGGAGCTCTGGTTCGCCA---TCCTCGAGTCCCAGATCGAGACAGGCGTGCCGT-T 11598 Query 249598 TAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCG 249656 || |||| ||| ||||||||||||| ||| ||||| | |||| || |||||| Sbjct 11599 CATGTTGTACAAGGACGCGTGCAACGAGAAGTCCAACCAGAAGAATCTCGGCACCATCAA 11658 Query 249657 CTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTG 249716 | || || || || | ||| | ||| | || | ||| ||||||| || || || Sbjct 11659 GTGCTCCAACCTGTGCACGGAGATTATTGAGTATACCTCCCCCGAGGAGACGGCGGTGTG 11718 Query 249717 CAACCTGGC 249725 |||| |||| Sbjct 11719 CAACTTGGC 11727 >seq638 Length=9488 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/203 (69%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 254201 CTGT-CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGC 254259 |||| || ||||| || ||| | || |||| ||||| ||| || | |||| |||| Sbjct 4801 CTGTGCCTCCTTTTAAACTCATCATTTTGGATGAGGCAGACGCCCTCCTACCCGATGCGC 4742 Query 254260 AGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGT 254319 || | || ||||| || | ||||||| | || ||||| || |||||| | ||| Sbjct 4741 AGGCGGCGCTCCGTCGTATGATGGAGGACTTCAGCGAGGTGACACGCTTTTGCATCCTGT 4682 Query 254320 GCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||||||||||| || |||| ||| | ||| ||| ||||||||||| || ||| Sbjct 4681 GCAACTACGTGAGCCGCATTATCGACCCCATCGCTAGTCGCTGCGCCAAGTTCCGCTTCC 4622 Query 254380 GCACCCTCGCGCCCAAGTCGATG 254402 || | |||| || ||| || || Sbjct 4621 GCCCGCTCGTGCAGAAGGCGCTG 4599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073666244439040