Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3958 118 8e-22 seq3874 118 8e-22 seq207 118 8e-22 seq3040 114 1e-20 seq3898 113 4e-20 >seq3958 Length=1797 Score = 118 bits (130), Expect = 8e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| |||||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 465 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTG 524 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 525 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 584 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||| ||||| | || ||||||||||| || Sbjct 585 CGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGT 644 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||||||| ||||||||||||||| Sbjct 645 AAGGGTCTTCACGAAGATTTGCATGTTG 672 >seq3874 Length=1858 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| || ||| | || || Sbjct 1616 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCG 1675 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| ||||| | |||||||||||| Sbjct 1676 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 1735 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | |||||||||||| | ||||||||| Sbjct 1736 ATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTG 1795 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 1796 CCGGTCAGCGTCTTCACGAAGATCTGCATG 1825 >seq207 Length=16371 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| || ||| | || || Sbjct 16128 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCG 16069 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| ||||| | |||||||||||| Sbjct 16068 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 16009 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | |||||||||||| | ||||||||| Sbjct 16008 ATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTG 15949 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| |||||||| ||||| |||||| || Sbjct 15948 CCGGTCAGCGTCTTCACGAAGATCTGCATGATG 15916 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| || ||| | || || Sbjct 16356 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCG 16297 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| ||||| | |||||||||||| Sbjct 16296 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 16237 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | |||||||||||| | ||||||||| Sbjct 16236 ATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTG 16177 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 16176 CCGGTCAGCGTCTTCACGAAGATCTGCATG 16147 >seq3040 Length=2570 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| |||||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 951 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTG 1010 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 1011 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1070 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||| ||||| | || ||||||||||| || Sbjct 1071 CGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGT 1130 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||| ||||| |||||| || Sbjct 1131 CAGCGTCTTCACGAAGATCTGCATGCTG 1158 >seq3898 Length=1846 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 1531 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTG 1590 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| ||||| | |||||||||||| || || Sbjct 1591 CTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 1650 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | |||||||||||| | ||||||||||| || Sbjct 1651 CGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGT 1710 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||| ||||| |||||| Sbjct 1711 CAGCGTCTTCACGAAGATCTGCATG 1735 Score = 109 bits (120), Expect = 4e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 37 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTG 96 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| ||||| | |||||||||||| || || Sbjct 97 CTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 156 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||| || | | ||||||||||| || Sbjct 157 CGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACTTCGAGCGCGATCGTCTTGCCGGT 216 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||||||| ||||| |||||| || Sbjct 217 CAGAGTCTTCACGAAGATCTGCATGATG 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395040146952880