Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2024 140 3e-28 >seq2024 Length=3994 Score = 140 bits (154), Expect = 3e-28 Identities = 495/759 (65%), Gaps = 36/759 (5%) Strand=Plus/Plus Query 20776 CTCAAACGGCCATCTCCATCTCTAT-GTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGA 20834 ||||||| ||||||| ||| | || || | | | ||||||||| || | | || | Sbjct 2156 CTCAAACCGCCATCTTCATGGCAATCGTCGCG-TACGGGTCGTAGTCCACCACCTCCACA 2214 Query 20835 TCCGCGCGCGTAAAGTCCTCCA----GACGCGCCACCTTTCTCAAAATCTTCAGCCGCGG 20890 || || | | ||||||||| | ||||| |||| | || || || || || Sbjct 2215 TCTCCGACCTCATAGTCCTCCAAGTAGTCGCGCT-CCTTCTTGAAGATGAGCA--CGGGG 2271 Query 20891 AAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAAC 20950 || ||| ||||| | | |||||| | |||| | || |||||||| ||||| || Sbjct 2272 AAGCGG-CGCGGCACACGCGTCAGCTGCTCCTGCAGCGCCTCCACGTGGTTCTTGTAGAC 2330 Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010 ||| || || |||| |||||||| | || ||||| | || || ||| | | ||||| Sbjct 2331 GTGAGCATCCCCCAGCGTGTGCACGAGCTCGCCCGGCTTGAGCCCGGTGGCCTTGGCGAT 2390 Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 || | || |||| |||||| |||||||||||| || || ||||| ||||| ||| Sbjct 2391 CAAAATGGTGAGGAAGGCGTACGAGGCGATGTTAAAGGGCACACCGAGCCCCATATCGCA 2450 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC-----CGAG-CCACGTAAAACTGACA 21124 | |||||| ||| |||| ||||||| | || | |||||| ||||| | Sbjct 2451 ACTGCGCTGGTATAGCATGCAGCTCAGCTCCTGCGTGTTCGTGTTCACGTAGAACTGCCC 2510 Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 | | ||| || || ||||| |||||| | || | ||||||||||||||| | Sbjct 2511 GAGGAGGTGGCACGGCGGGAGGGCCATCTTGTCCAGCGCGGCGGGGTTCCACGCGGTGAA 2570 Query 21185 AACGATGCGCCGATCGT--GGGGCCGCCTGTTAATTAGATCCACCACGTAACGC---AGC 21239 | | || || |||| ||| || || | || | | ||| ||| | | Sbjct 2571 GAGCAGCCGGCGGTCGTTCGGGTTCGTCT-----TGAGCGTCTCGACGATGCGCTTGATC 2625 Query 21240 TGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGT 21299 || || || |||| || |||||||| ||| | ||||||| ||||| || || Sbjct 2626 TGATCGACGCCCTTGCCGTCGTAGTTCTCGTGGAAGGAGGTGTACTCGGCCCCGAAGTGG 2685 Query 21300 CTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGC 21359 | ||||||||| |||||||||||||| || || ||| | || | || ||| | Sbjct 2686 CGCCACTGGAAGCCGTACACCGGCCCGAGGTCCATCTCCTCGTAGTGCGTGAGGCCGCG- 2744 Query 21360 GCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC----GCGGCGCG 21414 || | | | ||||||||| |||| ||||||| || | ||||| ||||| | Sbjct 2745 GCTGTCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTGGACGCCCTTGTCGGCGAG 2804 Query 21415 ACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCC 21474 ||| | ||| || ||| |||||| | ||||| | | |||||| |||||| | Sbjct 2805 -CAGCT---TGGCGTTGGTCTCGCCCCTCAGGAACCAAATGAGCTCCTCGGAGACGCCGC 2860 Query 21475 TCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGT 21513 ||| || || | || || || | ||| || | || || Sbjct 2861 GCCAGAAGACGCGCTTCGTCGTGAGCAGCGGCAGCTGGT 2899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427738045574400