Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq207 96.9 3e-15 seq3898 93.3 4e-14 seq3874 93.3 4e-14 seq303 91.5 1e-13 seq3040 84.2 2e-11 >seq207 Length=16371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 16147 GCCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 16088 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || |||||||| || || ||| ||||||| || ||||| || ||||| Sbjct 16087 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 16028 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| | | |||||| Sbjct 16027 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 15968 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | | | |||||||||||||| ||| || ||||| || ||||| Sbjct 15967 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 15920 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || ||||| || || | |||| || |||||||| Sbjct 16351 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTG 16292 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| ||||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 16291 CTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 16232 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | |||||| | | ||||||||| | | | |||||||||||| Sbjct 16231 CGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGT 16172 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||| || ||||| || ||||| Sbjct 16171 CAGCGTCTTCACGAAGATCTGCAT 16148 >seq3898 Length=1846 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || ||||| || || | |||| || |||||||| Sbjct 1531 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTG 1590 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| ||||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 1591 CTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 1650 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | |||||| | | ||||||||| | | | |||||||||||| Sbjct 1651 CGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGT 1710 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||| || ||||| || ||||| Sbjct 1711 CAGCGTCTTCACGAAGATCTGCAT 1734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 13 GCCGCCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 72 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || |||||||| || || ||| ||||||| || ||||| || ||||| Sbjct 73 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 132 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| | | |||||| Sbjct 133 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 192 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | | | |||||||||||||| || || ||||| || ||||| Sbjct 193 TTCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 240 >seq3874 Length=1858 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || ||||| || || | |||| || |||||||| Sbjct 1621 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTG 1680 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| ||||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 1681 CTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 1740 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | |||||| | | ||||||||| | | | |||||||||||| Sbjct 1741 CGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGT 1800 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||| || ||||| || ||||| Sbjct 1801 CAGCGTCTTCACGAAGATCTGCAT 1824 >seq303 Length=13852 Score = 91.5 bits (100), Expect = 1e-13 Identities = 265/405 (65%), Gaps = 5/405 (1%) Strand=Plus/Minus Query 153957 ACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTG 154016 ||||| ||| || | |||||| | ||| || |||| | |||||||||||| | | Sbjct 11412 ACGCGCTTCATGAACAGATCGGGGATCCAGAGCGCGTAGAACAGGTCGCGCGCACGCTGG 11353 Query 154017 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGT 154076 || || |||| |||| || |||| | | | || | ||||| |||||||| Sbjct 11352 TCGTCCTTGCCGGTGTTGCGCTTCATGAGCAGAAACTCGAAGATGTCCGCGTGCCACGGC 11293 Query 154077 TCCACGTAAACTGCTTGAGCGCCTTTACGCTT---GCCGCCCTGATTTACGTGACGCACC 154133 || | ||| | || || || || ||||| ||||||||||| |||| || || Sbjct 11292 TCGAGGTACATGGCGAAGGCACCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCC 11233 Query 154134 ATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTA 154193 |||| || | || || | ||| || | || ||| ||| || ||||| || Sbjct 11232 GTATTATTCCACACACGGATCATCGGCATGAGGCCGTTGGACGTGCCGTTCGTGCCGGCG 11173 Query 154194 ATCTTGCTG-TTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTT 154252 || | |||| |||| | || | | ||| |||| | ||||| |||||| || || Sbjct 11172 ATGTAGCTGCCCGCGG-CACGGATGTTGTGCACGTGGATGCCAATGCCGCCGGCGGCCTT 11114 Query 154253 GGAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCGCTTTCCAT 154312 | ||||| |||||| || || | |||| ||||| || |||||| || | ||| Sbjct 11113 GCTGATCACGGCGCACTCCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCAT 11054 Query 154313 GGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGC 154357 | || ||||| || || |||||||| || | || |||||||| Sbjct 11053 CGCCACCAGGAAGCACGAGCTCATCTGGGGCTTGGGGGTGCCGGC 11009 >seq3040 Length=2570 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || ||||| || || | |||| || |||||||| Sbjct 951 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTG 1010 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||| || || ||||| || || || ||||| || ||||| ||| || Sbjct 1011 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1070 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | |||||| | | ||| ||||| | || | |||||||||||| Sbjct 1071 CGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGT 1130 Query 139741 CAACGTTTTTACGAATATTTGCATAGCTTATGT 139773 || ||| || ||||| || ||||| ||| |||| Sbjct 1131 CAGCGTCTTCACGAAGATCTGCAT-GCTGATGT 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496018858176000