Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5767 145 1e-29 seq303 131 2e-25 seq3519 109 8e-19 seq2484 102 1e-16 >seq5767 Length=966 Score = 145 bits (160), Expect = 1e-29 Identities = 303/440 (69%), Gaps = 16/440 (4%) Strand=Plus/Minus Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||||||||| |||||||||||||| || || | || ||| ||||||| |||||||| Sbjct 462 TTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCT-CCATCTTCTGGCTCAA 404 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| | |||||||| || || ||| |||||| | || || || |||||||| Sbjct 403 GAAGCGCGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGG 344 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC-AGAT 125613 ||| ||| ||||| ||| | | ||| | |||| | | | | | || | || | Sbjct 343 CCTGCACACCGACTTCGCC-TGC--CTGCTCTACAAC-AGCCACAT--CAAGCACAAGCT 290 Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 | || || || || ||| | ||||| ||||| || || | ||||| Sbjct 289 GCCCCG-CGAGCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCA 231 Query 125674 TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACA 125733 | ||| | || || || || | || ||||||||| | | || ||| || |||||| Sbjct 230 TCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACA 171 Query 125734 TAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---AAGATTTACAACG 125790 | ||||| || || || || || || || || | | || | | ||| ||||||| Sbjct 170 TCGAGTTCGTCGCCGACCGCCTGCT---CGTGTCGCTCGGGCTCGAGAAGCACTACAACG 114 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 ||| || ||||| || |||||| | || || || || ||||||||||| |||| Sbjct 113 CCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACCAACTTCTTCG 54 Query 125851 AGAAGAAGGTCAGCGAGTAC 125870 ||||||||||| |||||||| Sbjct 53 AGAAGAAGGTCGGCGAGTAC 34 >seq303 Length=13852 Score = 131 bits (144), Expect = 2e-25 Identities = 379/577 (66%), Gaps = 10/577 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| ||| ||||| |||| ||| || | ||| ||| | | | || Sbjct 11180 ACGAACGGCACGTCCAACGGCCTCATGCCGATGATCCGTGTGTGGAATAATACGGCCCGC 11239 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||| ||| || || || | ||| | ||| | || || ||| Sbjct 11240 TACGTGGATCAGGGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATGTACCTCGAGCCGTGG 11299 Query 96927 CACGCGGACGTTTTTGACTTTAT---CGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||||||| | || || ||| | | || |||||| | | ||| || || Sbjct 11300 CACGCGGACATCTTCGAGTTTCTGCTCATGAAGCGCAACACC---GGCAAGGACGACCAG 11356 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| |||| || || |||||| | || ||| |||||||||||||||| || Sbjct 11357 CGTGCGCGCGACCTGTTCTACGCGCTCTGGATCCCCGATCTGTTCATGAAGCGCGTGAAG 11416 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| | |||| | ||| |||| || || | ||||| || ||| |||| Sbjct 11417 AGCGAGGGCAAGTGGACGTTGATGGACCCCAACACGACGCCCGGCCTCAGCGACTGCTAC 11476 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-ACG 97162 ||||| |||| ||| ||| || ||||||| ||||| |||| | || Sbjct 11477 GGCGAGAAGTTCGAGCAGCTCTACGAGGACTACGAGGCGAAGGGCATGGGCGTGCGCACC 11536 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 | || | || | || || ||| |||||| | | | ||| | ||||| || || Sbjct 11537 A-TCCAGGCGCAGGAGCTCTGGTTCGCCATCCTCGAGTCCCAGATCGAGACAGGCGTGCC 11595 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCG-CAACAGCAACCAACGCCACTTGGGCACCA 97281 || ||| | |||||||| |||| | || || |||||| | | ||||||| Sbjct 11596 GTTCATGTTGTACAAGGA-CGCGTGCAACGAGAAGTCCAACCAGAAGAATCTCGGCACCA 11654 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 ||||| ||||||| ||||||||||| ||| | ||||| |||| || || |||||||| | Sbjct 11655 TCAAGTGCTCCAACCTGTGCACGGAGATTATTGAGTATACCTCCCCCGAGGAGACGGCGG 11714 Query 97342 TTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 | ||| |||| || || || |||||||||| Sbjct 11715 TGTGCAACTTGGCCTCCATCGCGGTGTCCAAGTTTGT 11751 >seq3519 Length=2121 Score = 109 bits (120), Expect = 8e-19 Identities = 263/396 (66%), Gaps = 14/396 (4%) Strand=Plus/Minus Query 125479 CCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTA 125538 ||||||| |||||||||||||| || | |||||||| || || ||| |||||| | | Sbjct 2102 CCATCTTCTGGCTCAAGAAGCGTGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCA 2043 Query 125539 TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGC 125598 | || || ||||||||||| ||| ||||| ||| || || | || | | | Sbjct 2042 TCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATCA 1983 Query 125599 GTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 | | || ||| | |||| || || ||| | ||||| ||||| Sbjct 1982 AGCACAAGCTGCCCCGCGAGCGC-------GTGCTCGCCATCATCACCGACGCCGTCGTC 1930 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || || | ||||| | ||| | || || || || | || ||||||||| | | Sbjct 1929 ATCGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGAC 1870 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 || ||| || ||||||| ||||| || || || || || || || || | | || | | Sbjct 1869 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---CGTGTCGCTCGGGCTC 1813 Query 125778 AAGATT---TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGT 125834 ||| |||||||||| || ||||| || |||||| | || || || || Sbjct 1812 GAGAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGC 1753 Query 125835 AAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||||||||| ||||||||||||||| |||||||| Sbjct 1752 AAGACCAACTTCTTCGAGAAGAAGGTCGGCGAGTAC 1717 >seq2484 Length=3244 Score = 102 bits (112), Expect = 1e-16 Identities = 259/392 (66%), Gaps = 14/392 (4%) Strand=Plus/Plus Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 ||| |||||||||||||| || | |||||||| || || ||| |||||| | || || Sbjct 1 CTTCTGGCTCAAGAAGCGTGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATCTC 60 Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCC 125602 || ||||||||||| ||| ||||| ||| || || | || | | | | Sbjct 61 GCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATCAAGCA 120 Query 125603 CGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAG 125661 | || ||| | |||| || || ||| | ||||| ||||| || | Sbjct 121 CAAGCTGCCCCGCGAGCGC-------GTGCTCGCCATCATCACCGACGCCGTCGTCATCG 173 Query 125662 AACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721 | | ||||| | ||| | || || || || | || ||||||||| | | || | Sbjct 174 AGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCA 233 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA 125781 || || ||||||| ||||| || || || || || || || || | | || | | ||| Sbjct 234 TGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---CGTGTCGCTCGGGCTCGAGA 290 Query 125782 TT---TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 |||||||||| || ||||| || |||||| | || || || || |||| Sbjct 291 AGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGA 350 Query 125839 CCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||||| ||||||||||||||| |||||||| Sbjct 351 CCAACTTCTTCGAGAAGAAGGTCGGCGAGTAC 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740991763612800