Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2024 107 1e-18 >seq2024 Length=3994 Score = 107 bits (118), Expect = 1e-18 Identities = 367/568 (65%), Gaps = 13/568 (2%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| || ||||| || ||||| | | |||||||||||| || ||||| ||||| Sbjct 2293 AGCTGCTCCTGCAGCGCCTCCACGTGGTTCTTGTAGACGTGAGCATCCCCCAGCGTGTGC 2352 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 || | ||| ||||| | |||||||| | | || |||| ||||||| ||| Sbjct 2353 ACGAGCTCGCCCGGCTTGAGCCCGGTGGCCTTGGCGATCAAAATGGTGAGGAAGGCGTAC 2412 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||||||||||| || |||| |||||| || | | | |||||| ||| || Sbjct 2413 GAGGCGATGTTAAAGGGCACACCGAGCCCCATATCGCAAC-TGCGCTGGTATAGCATGCA 2471 Query 25593 CGAGAGCTC-------TTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAA 25645 ||||| ||||| | ||||||| ||||| | | | || |||||| || | Sbjct 2472 GCTCAGCTCCTGCGTGTTCGT-GTTCACGTAGAACTGCCCGAGGAGGTGGCACGGCGGGA 2530 Query 25646 GAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTG 25705 | || || | ||| | |||||||| ||| | || | | | ||| | | Sbjct 2531 GGGCCATCTTGTCCAGCGCGGCGGGGTTCCACGCGGTGAAGAGCAGCCGGCGGTCGTTCG 2590 Query 25706 GGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 25765 |||| | ||| || || || | | |||||| || ||| | || ||||| Sbjct 2591 GGTTCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGATCGACGCCCTTGCCGTCGTAGT 2650 Query 25766 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTC 25825 | | | |||||||| || ||||| | | ||||||||| ||||||||||| | Sbjct 2651 TCTCGTGGAAGGAGGTGTACTCGGCCCCGAAGTGGCGCCACTGGAAGCCGTACACCGGCC 2710 Query 25826 CTAGGTCTCCATCT--TCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACC 25883 | ||| ||||||| || |||| | ||| | | || | ||| | | | || Sbjct 2711 CGAGG--TCCATCTCCTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCC 2768 Query 25884 ATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 25943 ||| |||||||||| | || ||||| |||| |||| |||| ||| || || || Sbjct 2769 GTTGTCGTCCCAGATGTGGACGCCCTTGTCGGCGAGCAGCTTGGCGTTGGTCTCGCCCCT 2828 Query 25944 GACGAACCACAGCAGCTCCGCCGTGACG 25971 | |||||| | |||||| | | |||| Sbjct 2829 CAGGAACCAAATGAGCTCCTCGGAGACG 2856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340107421291440