Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq303 95.1 1e-14 seq3958 86.0 5e-12 >seq303 Length=13852 Score = 95.1 bits (104), Expect = 1e-14 Identities = 271/411 (66%), Gaps = 13/411 (3%) Strand=Plus/Minus Query 129990 CATCAAACTCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 |||||| ||||| | || || | |||| || || ||||| |||| |||||| | ||| | Sbjct 11440 CATCAACGTCCACTTGCCCTCGCTCTTC-ACGCGCTTCATGAACAGATCGGGGATCCAGA 11382 Query 130049 GGGCGTACAACAAATCTCGCGC----TTTTCTATCCTCGGCACCCATGTTACGTTTCAGT 130104 | ||||| |||| || ||||| | || |||| | || |||| || |||| Sbjct 11381 GCGCGTAGAACAGGTCGCGCGCACGCTGGTCG-TCCTTG---CCGGTGTTGCGCTTCATG 11326 Query 130105 TCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTC 130164 || || ||| | ||||| ||||||||||| || | || || || | || ||||| Sbjct 11325 AGCAGAAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTACATGGCGAAGGCACCCTTG 11266 Query 130165 CGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCC 130221 || || ||| || || || |||| ||| | | ||| || | || || | ||| | | Sbjct 11265 CGCTTACCGCCGCCCTGATCCACGTAGCGGGCCGTATTATTCCACACACGGATCATCGGC 11206 Query 130222 TCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTA 130281 | ||||||| ||||||||| |||| | ||| | ||||| || || | ||| Sbjct 11205 ATGAGGCCGTTGGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCCGCGGCACGGATGTTG 11146 Query 130282 TGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTT 130341 || ||| | || ||||||||| | || |||| ||||| || ||||| Sbjct 11145 TGCACGTGGATGCCAATGCCGCCGGCGGCCTTGCTGATCACGGCGCACTCCTTGAGCGTG 11086 Query 130342 TCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAG 130392 || || ||||| | || ||||| || || || | ||||| |||||| Sbjct 11085 TCGTAGATGCCCTCAATGCTGTCATCCTTCATCGCCACCAGGAAGCACGAG 11035 >seq3958 Length=1797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || | ||||| || ||| || | || || || || | Sbjct 671 AACATGCAAATCTTCGTGAAGACCCTTACCGGCAAGACGATCGCCCTCGAGGTCGAGGCG 612 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || | | || || || || ||||||||||| || || || || Sbjct 611 AGCGACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 552 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | ||||| |||||| || | || ||| Sbjct 551 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTAC 492 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || ||||| Sbjct 491 AACATCCAGAAGGAGTCCAC 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419690759633200