Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5767 149 1e-30 seq3519 149 1e-30 seq2484 129 1e-24 seq139 127 4e-24 >seq5767 Length=966 Score = 149 bits (164), Expect = 1e-30 Identities = 275/402 (68%), Gaps = 5/402 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| || ||||| | ||||||||||||||||||||| ||| Sbjct 53 TCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTG 112 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | || || | |||| | |||||| || || ||||| | Sbjct 113 GCGTTGTAGTGCTTCTCGAGCCCGAGCGACACGAGCAGGCGGTCGGCGACGAACTCGATG 172 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || | ||||||||| || | || || | || || |||||| Sbjct 173 TACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATG 232 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| ||| || | || || || | || || ||| | | | | |||| Sbjct 233 AACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCGAGCACGCGCTCGCGGGGCAGC 292 Query 251803 TTGTTCTCCA----GCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | ||| | ||| || || | | || | |||||| |||||||| Sbjct 293 TTGTGCTTGATGTGGCTGT-TGTAGAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTC 351 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||| | || || |||||||| || || ||| ||||||| Sbjct 352 GCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCGGGCATCACGCCGCGCTTCTTGAGCCA 411 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| | ||| ||||| || ||||| | | |||||||| Sbjct 412 GAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGAC 453 >seq3519 Length=2121 Score = 149 bits (164), Expect = 1e-30 Identities = 266/387 (69%), Gaps = 5/387 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| || ||||| | ||||||||||||||||||||| ||| Sbjct 1736 TCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTG 1795 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | || || | |||| | |||||| || || ||||| | Sbjct 1796 GCGTTGTAGTGCTTCTCGAGCCCGAGCGACACGAGCAGGCGGTCGGCGACGAACTCGATG 1855 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || | ||||||||| || | || || | || || |||||| Sbjct 1856 TACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATG 1915 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| ||| || | || || || | || || ||| | | | | |||| Sbjct 1916 AACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCGAGCACGCGCTCGCGGGGCAGC 1975 Query 251803 TTGTTCTCCA----GCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | ||| | ||| || || | | || | |||||| |||||||| Sbjct 1976 TTGTGCTTGATGTGGCTGT-TGTAGAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTC 2034 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||| | || || |||||||| ||||| ||| ||||||| Sbjct 2035 GCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCGGGCATCACGCCACGCTTCTTGAGCCA 2094 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||| ||||| || ||||| Sbjct 2095 GAAGATGGAGCAGAAGGAGCCGGAGAA 2121 >seq2484 Length=3244 Score = 129 bits (142), Expect = 1e-24 Identities = 248/364 (68%), Gaps = 5/364 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| || ||||| | ||||||||||||||||||||| ||| Sbjct 363 TCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTG 304 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | || || | |||| | |||||| || || ||||| | Sbjct 303 GCGTTGTAGTGCTTCTCGAGCCCGAGCGACACGAGCAGGCGGTCGGCGACGAACTCGATG 244 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || | ||||||||| || | || || | || || |||||| Sbjct 243 TACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATG 184 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| ||| || | || || || | || || ||| | | | | |||| Sbjct 183 AACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCGAGCACGCGCTCGCGGGGCAGC 124 Query 251803 TTGTTCTCCA----GCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | ||| | ||| || || | | || | |||||| |||||||| Sbjct 123 TTGTGCTTGATGTGGCTGT-TGTAGAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTC 65 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||| | || || |||||||| ||||| ||| ||||||| Sbjct 64 GCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCGGGCATCACGCCACGCTTCTTGAGCCA 5 Query 251919 GAAG 251922 |||| Sbjct 4 GAAG 1 >seq139 Length=19434 Score = 127 bits (140), Expect = 4e-24 Identities = 225/322 (70%), Gaps = 22/322 (7%) Strand=Plus/Minus Query 218527 GACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTATTCCCAGCGT 218582 || |||||||||||||| ||||| || | || |||| |||| ||||| ||||||| Sbjct 15896 GATAAGGAGCTCATTCTCTTCTCCATTGCAG-AT--TGTG-AGCGGTCTATCCCCAGCGC 15841 Query 218583 GGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCT 218642 | | || ||| ||||||| ||||| ||||||||||| | ||||||| || | Sbjct 15840 GATTGACGGCTTCAAGCCTGGCCAGCGCAAGATCCTCTTCTCTTGTCTCAAGCGTAATC- 15782 Query 218643 GGTTCAAGAA----ATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCT 218698 |||| || || ||||||| ||| | || ||||| || || || || | || Sbjct 15781 ---TCAACAAGGCCATCAAGGTCGTGCAGCTCTCCGGTTACGTCTCGGAGCACTCCGCCT 15725 Query 218699 ACCATCACGGTGAGCAGAGTCTG---CAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 |||| || || |||||| ||| ||| | ||||| |||||||| ||| ||| || Sbjct 15724 ACCACCATGGCGAGCAGTCGCTGATTCAG---ACGATTGTCGGCATGGCGCAGAACTTTG 15668 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGG 218815 ||||||| |||||| || |||||| || |||||||||| ||| | || || || Sbjct 15667 TGGGCAGCAACAACGTGCCGCTGCTGCGGCCAGACGGTCAGTTCGGTACACGGCTGCAGG 15608 Query 218816 GTGGAAAGGATAGTGCTTCTGC 218837 | || |||||| ||| |||| Sbjct 15607 GCGGTAAGGATCATGCCGCTGC 15586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027740928522480