Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1542 206 5e-48 seq5767 205 2e-47 seq3519 190 4e-43 seq2484 165 2e-35 seq3958 156 8e-33 seq3040 156 8e-33 seq303 116 7e-21 seq5116 87.8 3e-12 seq3881 87.8 3e-12 seq481 87.8 3e-12 >seq1542 Length=5095 Score = 206 bits (228), Expect = 5e-48 Identities = 338/485 (70%), Gaps = 4/485 (1%) Strand=Plus/Plus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| | | ||| |||||| || |||||||| |||||| |||| | ||| || Sbjct 954 CCACATGCCGTAGACGTAGTCCTTGGCGTGGCCCCAGTCGCGCAGGGCGTTGACGTTACC 1013 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGT--GATTTTT 268375 |||| ||| ||||||||||||| || | ||| || | ||||| | ||| || Sbjct 1014 GAGGGCGAGGTCTTTCTGCTTGCCGTATTTGATGCG--CACGGCCGCGCGGACGATCTTC 1071 Query 268376 CGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC 268435 ||| ||||| || | ||||| | ||| |||||||||||||||||||||||| Sbjct 1072 TTGGTGACGAAGGTGGCACCACGGCGCGGGGACTCGTGGTTGAAGAGGATGCCGTTCGCG 1131 Query 268436 GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495 ||||||||||| || ||||| |||||||||||| ||||||| | ||| ||| || Sbjct 1132 GCGAACATGCCGTACGCCTCGCGGTAGTTCACGGTGATCCAGTAGCCGTACAGCTTGGCG 1191 Query 268496 ACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACT 268555 || |||||||| ||| || | |||||||||||| || || | || | || Sbjct 1192 ACCGCGTACGGGCTACGGGGGTAGAAGGGCGTCGTCTCGGACTGGGGCACCTCCTGCACG 1251 Query 268556 TTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAG 268615 ||| | |||||| ||| || || ||||||||||| || || || || |||| | Sbjct 1252 AGGCCGTACAGCTCGCTGGTGGAGGCCTGGTAGAACTTGCACGTCTTCTCCAGCCCGCTG 1311 Query 268616 ATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCC 268675 || || || ||||||| || || || ||||| ||| | | | || ||||| Sbjct 1312 GAGCGAATCGCGTCGAGCAGCTTGAGCGTGCCGATGCCGTCCGCCTGGCCGGTGTACTCA 1371 Query 268676 GGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGT 268735 || ||||||| ||||||| || ||| ||| || ||||||| || ||||| || || Sbjct 1372 GGGGTCTCGAAGGACACCTTCACGTGGGACTGCGCAGCCAGGTTGTACACCTCGTCGGGC 1431 Query 268736 TTGAC 268740 ||||| Sbjct 1432 TTGAC 1436 >seq5767 Length=966 Score = 205 bits (226), Expect = 2e-47 Identities = 337/480 (70%), Gaps = 17/480 (4%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 ||||||||||||||||||||||||| ||| |||||||||||||| |||||| Sbjct 15 TCATGACGCCCGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGG 74 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 ||| || || | |||||||||||| |||||||| |||| | ||||| | | Sbjct 75 TGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTCGAGCC 134 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | || | |||||| || ||||||||||||||||||||||| ||||| | || Sbjct 135 CGAGCGACACGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGT 194 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| || | ||| ||| | |||||||| ||||| ||||| ||| || |||| | Sbjct 195 TCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGG 254 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGA----GCT-T 10225 | ||| |||| | | |||| || ||| |||||||| || || ||| | Sbjct 255 ---CGTCGGTGATGATGGCGAGCACGCGCTCGCGGGGCAGCTTGTGCTTGATGTGGCTGT 311 Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 | || || || | || | ||| |||||||||||||| ||||| |||||| Sbjct 312 TG--TAGAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTT 369 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 | || || |||||||| | || || || |||||||| |||| |||||| || Sbjct 370 GCTGAAGGTGAGCCCGGGCATCACGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGA 429 Query 10346 CCCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403 ||||||| |||||| ||||| ||| | || ||| ||||||||| ||||||| Sbjct 430 GCCGGAGA--AGAAGATGCCCTCGACGGCGGCGAAGCCGATGAGGCGCTCCTGGAAGGAG 487 >seq3519 Length=2121 Score = 190 bits (210), Expect = 4e-43 Identities = 302/429 (70%), Gaps = 13/429 (3%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 ||||||||||||||||||||||||| ||| |||||||||||||| |||||| Sbjct 1698 TCATGACGCCCGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGG 1757 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 ||| || || | |||||||||||| |||||||| |||| | ||||| | | Sbjct 1758 TGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTCGAGCC 1817 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | || | |||||| || ||||||||||||||||||||||| ||||| | || Sbjct 1818 CGAGCGACACGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGT 1877 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| || | ||| ||| | |||||||| ||||| ||||| ||| || |||| | Sbjct 1878 TCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGG 1937 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGA----GCT-T 10225 | ||| |||| | | |||| || ||| |||||||| || || ||| | Sbjct 1938 ---CGTCGGTGATGATGGCGAGCACGCGCTCGCGGGGCAGCTTGTGCTTGATGTGGCTGT 1994 Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 | || || || | || | ||| |||||||||||||| ||||| |||||| Sbjct 1995 TG--TAGAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTT 2052 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 | || || |||||||| | || || || |||||||| |||| |||||| || Sbjct 2053 GCTGAAGGTGAGCCCGGGCATCACGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGA 2112 Query 10346 CCCGGAGAA 10354 |||||||| Sbjct 2113 GCCGGAGAA 2121 >seq2484 Length=3244 Score = 165 bits (182), Expect = 2e-35 Identities = 183/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 ||||||||||||||||||||||||| ||| |||||||||||||| |||||| Sbjct 401 TCATGACGCCCGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGG 342 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 ||| || || | |||||||||||| |||||||| |||| | ||||| | | Sbjct 341 TGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTCGAGCC 282 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | || | |||||| || ||||||||||||||||||||||| ||||| | || Sbjct 281 CGAGCGACACGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGT 222 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| || | ||| ||| | |||||||| ||||| ||||| ||| || |||| | Sbjct 221 TCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGG 162 Query 10174 CTTC 10177 | || Sbjct 161 CGTC 158 >seq3958 Length=1797 Score = 156 bits (172), Expect = 8e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| ||||||||||| || |||||||| || || | | Sbjct 442 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 501 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || ||||| || || Sbjct 502 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 561 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 562 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTCGCCTCGAC 620 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||| || || || || |||||||| ||||| || ||||| Sbjct 621 CTCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCAT 668 >seq3040 Length=2570 Score = 156 bits (172), Expect = 8e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| ||||||||||| || |||||||| || || | | Sbjct 928 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 987 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || ||||| || || Sbjct 988 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 1047 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 1048 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTCGCCTCGAC 1106 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||| || || || || || ||||| ||||| |||||||| Sbjct 1107 CTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1154 >seq303 Length=13852 Score = 116 bits (128), Expect = 7e-21 Identities = 304/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||||||||| || || | || || || || | |||||| | || || ||| || | Sbjct 11718 CACACCGCCGTCTCCTCGGGGGAGGTATACTCAATAATCTCCGTGCACAGGTTGGAGCAC 11659 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 ||||||||||| ||| ||| || |||| |||| ||||| |||||||| | || Sbjct 11658 TTGATGGTGCCGAGATTCTTCTGGTTGGACTTCTCGTTGCACGC-GTCCTTGTACAACAT 11600 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | |||| ||| ||||||||||| | || || || ||||| || |||| | Sbjct 11599 GAACGGCACGCCTGTCTCGATCTGGGACTCGAGGATGGCGAACCAGAGCTCCTGCGCCTG 11540 Query 31880 GACGACTTTCTTCGCACGC-----CCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTAC 31934 || | | ||||||| |||| | ||||||| || || | |||| || Sbjct 11539 GA-----TGGTGCGCACGCCCATGCCCTTCGCCTCGTAGTCCTCGTAGAGCTGCTCGAAC 11485 Query 31935 TCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCG 31994 | || ||| || ||| | || ||||| | |||||||| | | || ||| | Sbjct 11484 TTCTCGCCGTAGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCATCAACGTCCACTTG 11425 Query 31995 ACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTC 32054 | ||| || || |||||||||||||| ||| | ||| | |||||| ||||| | Sbjct 11424 CCCTCGCTCTTCACGCGCTTCATGAACAGATCGGGGATCCAGAGCGCGTAGAACAGGTCG 11365 Query 32055 CTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCG 32114 | || || ||| |||| || ||| || | ||||| || || | |||||| Sbjct 11364 CGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCATGAGCAGAAACTCGAAGATGTCC 11305 Query 32115 GGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG 32155 | ||| ||||||||||||| |||||| | |||||||| Sbjct 11304 GCGTGCCACGGCTCGAGGTACATGGCGAAGGCACCCTTGCG 11264 >seq5116 Length=1205 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 83 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 140 >seq3881 Length=1854 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1647 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 1704 >seq481 Length=11046 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 10525 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 10582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921538532361600