Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3040 158 3e-33 seq3898 156 1e-32 seq3958 149 1e-30 seq5767 91.5 3e-13 seq3519 91.5 3e-13 seq2484 91.5 3e-13 >seq3040 Length=2570 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | |||| || || ||||| || ||||| ||| Sbjct 928 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 987 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 988 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 1047 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | ||||||| || || Sbjct 1048 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 1107 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||||||| |||||||| ||||| ||||| |||||||| Sbjct 1108 TCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1154 >seq3898 Length=1846 Score = 156 bits (172), Expect = 1e-32 Identities = 177/236 (75%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || || || | ||| || || ||||| || |||| Sbjct 10 CATG-CCGCCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 68 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || |||||||| || || || | || || || || |||||||| ||||| || Sbjct 69 CCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCG 128 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| ||||| |||||||| || || | ||||||| | Sbjct 129 GAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCT 188 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | |||||||||| ||||||||| |||||||||||||| ||||| |||||||| ||| Sbjct 189 CCACTTCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATG 244 >seq3958 Length=1797 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | |||| || || ||||| || ||||| ||| Sbjct 442 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 501 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 502 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 561 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | ||||||| || || Sbjct 562 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 621 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||||||| ||||| || ||||| ||||| || ||||| Sbjct 622 TCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCAT 668 >seq5767 Length=966 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTAT-CCCATGTTCTATGATCGGTATGAATGCCGATC 269170 ||| || |||||||| || ||||| | ||| || | | ||||| ||||| ||||| | Sbjct 244 CGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCC-TCATCGGCATGAACGCCGACC 186 Query 269171 TCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGA 269230 |||||| || || ||||| ||||| || || || | || | | ||||| |||| Sbjct 185 TCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTCGAGA 126 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | ||||| | | || ||||||| ||| ||||| | || |||||| || |||| Sbjct 125 AGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGA 66 Query 269291 CGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 | ||||||||||| ||| ||| |||| || || Sbjct 65 CCAACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 32 >seq3519 Length=2121 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTAT-CCCATGTTCTATGATCGGTATGAATGCCGATC 269170 ||| || |||||||| || ||||| | ||| || | | ||||| ||||| ||||| | Sbjct 1927 CGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCC-TCATCGGCATGAACGCCGACC 1869 Query 269171 TCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGA 269230 |||||| || || ||||| ||||| || || || | || | | ||||| |||| Sbjct 1868 TCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTCGAGA 1809 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | ||||| | | || ||||||| ||| ||||| | || |||||| || |||| Sbjct 1808 AGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGA 1749 Query 269291 CGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 | ||||||||||| ||| ||| |||| || || Sbjct 1748 CCAACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 1715 >seq2484 Length=3244 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTAT-CCCATGTTCTATGATCGGTATGAATGCCGATC 269170 ||| || |||||||| || ||||| | ||| || | | ||||| ||||| ||||| | Sbjct 172 CGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCC-TCATCGGCATGAACGCCGACC 230 Query 269171 TCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGA 269230 |||||| || || ||||| ||||| || || || | || | | ||||| |||| Sbjct 231 TCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTCGAGA 290 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | ||||| | | || ||||||| ||| ||||| | || |||||| || |||| Sbjct 291 AGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGA 350 Query 269291 CGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 | ||||||||||| ||| ||| |||| || || Sbjct 351 CCAACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179544367735840