Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5767 134 3e-26 seq3519 132 1e-25 seq2484 129 1e-24 >seq5767 Length=966 Score = 134 bits (148), Expect = 3e-26 Identities = 290/431 (67%), Gaps = 7/431 (2%) Strand=Plus/Minus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | ||| || || || | || ||||| |||||| || Sbjct 477 GAGCGCCTCATCGGCTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 418 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| || ||| | |||||| ||||| Sbjct 417 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATC 358 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCC 243469 |||||||||||||| ||| | |||| || | || ||| ||| || Sbjct 357 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTA--CAACAGCCACATCA 300 Query 243470 AGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 || ||||||| || ||| || |||||||| || || || | | ||| | Sbjct 299 AGCACAAGCTGCCCCGCGAGCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGA 240 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 239 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 180 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| ||||||||| | || | |||| || ||||| | Sbjct 179 GCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTCGAGAAGCACT 120 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||| ||| |||||||| | ||| |||||| | || ||||| || || || |||| Sbjct 119 ACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACCAACT 60 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 59 TCTTCGAGAAG 49 >seq3519 Length=2121 Score = 132 bits (146), Expect = 1e-25 Identities = 259/380 (68%), Gaps = 7/380 (2%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| || |||||||| || ||| | ||| Sbjct 2109 TTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGCGTGATGCCCGGGCTCACCTTCAGCAAC 2050 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-A 243464 ||| ||||| |||||||||||||| ||| | |||| || | || ||| | Sbjct 2049 GAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTA--CAACA 1992 Query 243465 GC----TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTG 243520 || || || ||||||| || ||| || |||||||| || || || | Sbjct 1991 GCCACATCAAGCACAAGCTGCCCCGCGAGCGCGTGCTCGCCATCATCACCGACGCCGTCG 1932 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTG 243580 | ||| ||||| ||||| |||||||| | || || || || ||||||||| | | Sbjct 1931 TCATCGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCG 1872 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | |||||| | ||||||||||| ||||| ||||||||| | || | |||| || | Sbjct 1871 ACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTCG 1812 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 |||| |||||| ||| |||||||| | ||| |||||| | || ||||| || | Sbjct 1811 AGAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCA 1752 Query 243701 AAACTAACTTCTTCGAAAAG 243720 | || ||||||||||| ||| Sbjct 1751 AGACCAACTTCTTCGAGAAG 1732 >seq2484 Length=3244 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | | ||| ||||| ||||| |||||||| | || || Sbjct 149 ATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGC 208 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || ||||||||| | || |||||| | ||||||||||| ||||| ||||||||| | Sbjct 209 CTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTG 268 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | |||| || ||||| |||||| ||| |||||||| | ||| |||||| Sbjct 269 CTCGTGTCGCTCGGGCTCGAGAAGCACTACAACGCCACCAACCCCTTCGACTTCATGGAG 328 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 | || ||||| || || || ||||||||||| ||| Sbjct 329 ATGATCTCGCTCACCGGCAAGACCAACTTCTTCGAGAAG 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102777128868000