Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3898 125 7e-24 seq207 116 4e-21 seq3874 114 1e-20 seq3958 111 2e-19 seq3040 107 2e-18 seq303 89.7 5e-13 >seq3898 Length=1846 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 14 CCGCCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 73 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| ||| | || || ||||||||||| ||||| Sbjct 74 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 133 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || |||||| Sbjct 134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACT 193 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| ||| || ||||| || ||||| Sbjct 194 TCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 240 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 1507 ACCACCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1566 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||| ||| | || || ||||||||||| ||||| Sbjct 1567 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 1626 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 1627 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 1686 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 1687 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1734 >seq207 Length=16371 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 16146 CCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 16087 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| ||| | || || ||||||||||| ||||| Sbjct 16086 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 16027 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 16026 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 15967 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 15966 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 15920 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 ||||||| | ||||| || || | |||||| || || || |||||||| || || | Sbjct 16371 CCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGC 16312 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| | || || ||||||||||| ||| | || || ||||||||||| ||||| || Sbjct 16311 GTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATG 16252 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCT 64399 || || || || || || || ||| || ||| | || || | || ||||| || Sbjct 16251 CCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCC 16192 Query 64400 ACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | | | ||||||||||||| || || ||||| || ||||| Sbjct 16191 AGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 16148 >seq3874 Length=1858 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 1597 ACCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1656 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||| ||| | || || ||||||||||| ||||| Sbjct 1657 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 1716 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 1717 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 1776 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 1777 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1824 >seq3958 Length=1797 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || ||| Sbjct 442 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 501 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 502 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 561 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || || || Sbjct 562 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 621 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATA 64450 || | | | ||||||||||| | || || ||||| |||||||| || ||| Sbjct 622 TCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCATGTTGATA 675 >seq3040 Length=2570 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || ||| Sbjct 928 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 987 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 988 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 1047 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || || || Sbjct 1048 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 1107 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 1108 TCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1154 >seq303 Length=13852 Score = 89.7 bits (98), Expect = 5e-13 Identities = 251/380 (66%), Gaps = 9/380 (2%) Strand=Plus/Minus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 ||||| ||||| |||| ||| || | ||| | ||||| |||| || ||||| | | Sbjct 11412 ACGCGCTTCATGAACAGATCGGGGATCCAGAGCGCGTAGAACAGGTCGCGCGCACGCTGG 11353 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGC 155024 || || ||| |||| ||||| | || ||| || | ||||| |||||||||||| Sbjct 11352 TCGTCCTTGCCGGTGTTGCGCTTCATGAGCAGAAACTCGAAGATGTCCGCGTGCCACGGC 11293 Query 155025 TCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACA 155081 || | || | ||| | || || ||||| || || || |||||||||| || | Sbjct 11292 TCGAGGTACATGGCGAAGGCACCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCC 11233 Query 155082 CAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGT 155141 |||||| |||| || | || || | |||| ||| ||||||||| ||||| Sbjct 11232 GTATTATTCCACACACGGATCATCGGCATGAGGCCGTTGGACGTGCCGTTCGTGCCGGCG 11173 Query 155142 ATCGCGCTG-CCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTT 155200 || |||| ||||| ||||| || || || | | ||| | || ||| || || Sbjct 11172 ATGTAGCTGCCCGCG-GCACGGATGTTGTGCACGTGGATGCCAATGCCGCCGGCGGCCTT 11114 Query 155201 --AGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTC 155258 ||| |||||| ||| | || ||||| || || | |||||||| || ||| Sbjct 11113 GCTGATCACGGCGCAC--TCCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCATCCTTC 11056 Query 155259 AACGTCAACAAGAAACACGA 155278 | || || || ||| ||||| Sbjct 11055 ATCGCCACCAGGAAGCACGA 11036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499599332323200