Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq303 201 1e-46 seq5767 122 1e-22 >seq303 Length=13852 Score = 201 bits (222), Expect = 1e-46 Identities = 896/1397 (64%), Gaps = 34/1397 (2%) Strand=Plus/Minus Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||||||||| ||| |||| ||| |||||||| ||| ||||| || ||||| || Sbjct 12346 CCAGAGACCGCGCTTGATGAGGTCCATCACGAGGTACTTGTTGACGACGGGGAACTCGCC 12287 Query 115884 CGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 115943 || || | || |||||||||| ||| | ||||| |||||||| ||||| || Sbjct 12286 GCTTAGCACACGGCGCACGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTT-CC 12228 Query 115944 CAAGATT-TGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 ||||| | || | || ||||| |||||||| || || | || || |||||| | | Sbjct 12227 CAAGAATCTGCGACGTCGAGGCGGTGGGCATCGGCGCGAGCAGCAGCGAGTTGCGCATGC 12168 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAG---CTTTGTCTCCC 116059 | ||| || | ||| | || || |||||||||| || | ||| | | | Sbjct 12167 CGACCTCCACGACGCGCTTTTTCAGCGCGTCCCAGTTCCAGCGGCCGCTCTTCGGCGTCT 12108 Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119 | | ||||| || ||||| || ||||| | || || || |||| || ||||| | Sbjct 12107 CGTGCCACAGGTCGAACTGCAGCATACCCTCCGAGGCGGGGCTGCCCTTGAAGGTCTCGT 12048 Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179 | |||||||| || | |||| || | || ||| | ||| |||| || || |||| Sbjct 12047 AGGGGCCCTCGACGGCAGCCAGGTCCACGGACGACTCCACGGCAGCGTAGTAGATGGTCT 11988 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA--AACGCGAGACGGCACAA 116237 | || ||| | || | || ||||| ||| || || | || ||| || Sbjct 11987 CGAAGATGTCCTCGTTGAGACGCTGCGCCTC--CGGGCTCGTGAAGGGCAGGCGGAGCAG 11930 Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 || | || ||||| || || || || ||||| | ||||| | | ||| || Sbjct 11929 GCAGAAGGCGTCGGCGAGGCCCTGCACGCCAAGGCCGACGGGGCGGTTGCGCATGTTGCT 11870 Query 116298 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357 || || ||||| ||||| || | |||| || || || | || || || ||| Sbjct 11869 GCGGCGCGCCGTCTCGACGGGGTAGTAGTTCCGGTCTATGACACGGTTCAGGTTGAAGGT 11810 Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 116417 || |||| || | || | || | || || || | |||| ||| || Sbjct 11809 GATCTCCTTCGTCACCTCGTACAGTAGCTGGTGGTCGAACTCGTTCTTCTCGCGATTCAC 11750 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | |||| | | ||||| || |||| || ||||| | ||||| || || || Sbjct 11749 AAACTTGGACACCGCGATGGAGGCCAAGTTGCACACCGCCGTCTCCTCGGGGGAGGTATA 11690 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 ||| ||||| ||||| |||| || || | ||| |||||||| | ||||| || || || Sbjct 11689 CTCAATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCGAGATTCTTCTGGTTGGA 11630 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 ||| ||| ||||| |||||||| | ||| | ||| || ||||| | ||||||| Sbjct 11629 CTTCTCGTTGCACGCGTCCTTGTACAACATGAACGGCACGCCTGTCTCGATCTGGGACTC 11570 Query 116598 GAGAATAGCCTTCCATACATCG-GCGGCTGGCACAGTGGCGTTGGCTCGC-CCCTCCTCC 116655 ||| || || ||| | || ||| |||| | ||| || || | |||| | || Sbjct 11569 GAGGATGGCGAACCAGAGCTCCTGCGCCTGG-ATGGTG-CGCACGCCCATGCCCTTCGCC 11512 Query 116656 TCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCA--CAGCCTCTGAGAGCCCTGGTG 116713 ||||| | |||||| ||| |||| || || ||| | ||||| || || | Sbjct 11511 TCGTAGTCCTCGTAGAGCTGCTCGAACTTCTCGCCGTAGCAGTCGCTGAGG--CCGGGCG 11454 Query 116714 CCTTATCTGGACAGAAGAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 | | | || | | | ||| ||| || | ||| ||| | ||||||||||| || Sbjct 11453 TCGTGTTGGGGTCCATCAACGTCCACTTGCCCTCGCTCTTCA-CGCGCTTCATGAACAGA 11395 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGAT 116830 || |||||||||||||| |||| || || || || ||| || || | || | Sbjct 11394 TCGGGGATCCAGAGCGCGTAGAACAGGTCGCGC--GCACGCTGGTCGTCCTTGCCGGTGT 11337 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 || | || || ||| || | ||| |||||||||||||| || ||||||| |||| Sbjct 11336 TGCGCTTCATGAGCAGAAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTACATGGCGA 11277 Query 116891 TTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 | |||||||| || || |||| | || || | ||||| || | || | Sbjct 11276 AGGCACCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCCGTATTATTCCACACAC 11217 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTG 117006 | | ||| || |||| || | || ||| || || || ||| | | | | Sbjct 11216 GGATCATCGGCATGAGGCCGTTGGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCCGC-G 11158 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 || | || | ||| | ||| || ||||| || || || ||| ||| |||||| Sbjct 11157 GCACGGATGTTGTGCACGTGGATGCCAATGCCGCCGGCGGCCTTGCTGATCACGGCGCAC 11098 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 ||| |||| || ||||||| || || || |||| |||| | || | |||||||| Sbjct 11097 TCCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATCGCCACCAGGAAGCA- 11039 Query 117127 CTCGA---CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 117183 ||| ||| || ||| | || || || |||||||||||||| |||||||| ||| || Sbjct 11038 --CGAGCTCATCTGGGGCTTGGGGGTGCCGGCGTTGAAGAGGGTGGGTGTCGCATGGGTG 10981 Query 117184 AACATACCTTGGGACAT 117200 || | || |||||||| Sbjct 10980 AAGAAGCCCTGGGACAT 10964 >seq5767 Length=966 Score = 122 bits (134), Expect = 1e-22 Identities = 354/532 (67%), Gaps = 20/532 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| ||||||||||||||| ||||| || ||| ||| ||||||| Sbjct 34 GTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTCCAT 93 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-ACCCCAATCTGTTTGAGGAGAC 127349 || || || ||||| | | ||| | | || | | ||| | | ||| || | Sbjct 94 GAAGTCGAAGGGGTTGGTGGCGTTGTAG-TGCTTCTCGAGCCCGAGCGACACGAGCAGGC 152 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||| ||||||| ||| || | |||||| ||||||||| | Sbjct 153 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCG-C 211 Query 127410 ATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | ||| |||||||| |||||||| ||||||| ||| | || || || | ||||||| Sbjct 212 ACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCG 271 Query 127469 TGAATAGTGTC-CACCCCAGGTCTATTGCGTAAAGTC----TTGAAGAGTTCCA--CAG- 127520 | | || | ||| || ||| | | || ||| |||| || ||| Sbjct 272 AGCACGCGCTCGCGGGGCAG--CTTGTGCTTGATGTGGCTGTTGTAGAG---CAGGCAGG 326 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||| || |||||||| || |||||||| || || |||| || || | Sbjct 327 CGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCGG 386 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 |||| | || |||||||| | |||||| || | || || ||||| ||||||||||| | Sbjct 387 GCATCACGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGC 446 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACC 127700 |||| || ||||| | | || ||||| |||||| | | | || | | || Sbjct 447 CCTCGACGGCGGCGAAGCCGATGAGGCGCTCCTGGAAGGAG-GCGCCGCTG--CCGATCC 503 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 | || ||||| | ||||| |||| ||| || |||| ||||||||| || Sbjct 504 AGCGCACGGCCCAGTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613451370844800