Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5767 159 6e-34 seq3519 138 2e-27 seq2484 132 8e-26 >seq5767 Length=966 Score = 159 bits (176), Expect = 6e-34 Identities = 362/536 (68%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 159628 CTTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || | || ||||||||||| |||||||||||||| | || || Sbjct 28 CTTCTGGTACT-CGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCA 86 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 |||||||| |||| ||||| | ||| ||| ||||| | ||||| | | | | Sbjct 87 TCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTCGAGCCCGAGCGACACGA 146 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| | ||| || || || |||||||| | ||| | || ||| || || | | Sbjct 147 GCAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGA 206 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 | | ||||| ||||| || | | ||||||||||| || |||| || ||||| | | Sbjct 207 GGCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGA 266 Query 159867 TCTGCGAG-ACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 | ||||| || || ||| | ||||| | |||||| || | || ||||| Sbjct 267 T-GGCGAGCACGCGCTCGCGGGGCAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAG 325 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || |||||| |||||| |||||||| || ||||||| ||||||| | | |||| || Sbjct 326 GCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCG 385 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGAT 160044 ||||| | || ||| |||||||| || |||| ||| ||| | ||| || ||||| Sbjct 386 GGCATCACGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCGGAGAAGAAGAT 444 Query 160045 CCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGT 160104 ||||| ||||| || || | | ||| | ||| || |||||| | || | | | Sbjct 445 GCCCTCGACGGCGGCGAAGCCGATGAGGCGCTCCTGGAAGGAGGCGCCGCTGCC---GAT 501 Query 160105 CCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGT 160160 ||| | |||||| | |||||||| |||||| || ||| || || ||||| Sbjct 502 CCAGCGCACGGCCCAGTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGCGT 557 >seq3519 Length=2121 Score = 138 bits (152), Expect = 2e-27 Identities = 270/394 (69%), Gaps = 4/394 (1%) Strand=Plus/Plus Query 159628 CTTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || | || ||||||||||| |||||||||||||| | || || Sbjct 1711 CTTCTGGTACT-CGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCA 1769 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 |||||||| |||| ||||| | ||| ||| ||||| | ||||| | | | | Sbjct 1770 TCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTCGAGCCCGAGCGACACGA 1829 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| | ||| || || || |||||||| | ||| | || ||| || || | | Sbjct 1830 GCAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGA 1889 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 | | ||||| ||||| || | | ||||||||||| || |||| || ||||| | | Sbjct 1890 GGCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGA 1949 Query 159867 TCTGCGAG-ACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 | ||||| || || ||| | ||||| | |||||| || | || ||||| Sbjct 1950 T-GGCGAGCACGCGCTCGCGGGGCAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAG 2008 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || |||||| |||||| |||||||| || ||||||| ||||||| | | |||| || Sbjct 2009 GCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCG 2068 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGG 160019 ||||| | |||||| |||||||| || |||| Sbjct 2069 GGCATCACGCCACGCTTCTTGAGCCAGAAGATGG 2102 >seq2484 Length=3244 Score = 132 bits (146), Expect = 8e-26 Identities = 266/389 (68%), Gaps = 4/389 (1%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || | || ||||||||||| |||||||||||||| | || || Sbjct 388 CTTCTGGTACT-CGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCA 330 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 |||||||| |||| ||||| | ||| ||| ||||| | ||||| | | | | Sbjct 329 TCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTCGAGCCCGAGCGACACGA 270 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| | ||| || || || |||||||| | ||| | || ||| || || | | Sbjct 269 GCAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGA 210 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 | | ||||| ||||| || | | ||||||||||| || |||| || ||||| | | Sbjct 209 GGCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGA 150 Query 159867 TCTGCGAG-ACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 | ||||| || || ||| | ||||| | |||||| || | || ||||| Sbjct 149 T-GGCGAGCACGCGCTCGCGGGGCAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAG 91 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || |||||| |||||| |||||||| || ||||||| ||||||| | | |||| || Sbjct 90 GCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCG 31 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAA 160014 ||||| | |||||| |||||||| || Sbjct 30 GGCATCACGCCACGCTTCTTGAGCCAGAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795082840876800