Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3874 158 1e-33 seq207 158 1e-33 seq3898 154 2e-32 seq3958 141 1e-28 seq3040 140 4e-28 >seq3874 Length=1858 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 1615 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 1674 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 1675 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 1734 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||||| ||||| |||| || ||| || || Sbjct 1735 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 1794 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 1795 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 1824 >seq207 Length=16371 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 16129 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 16070 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 16069 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 16010 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||||| ||||| |||| || ||| || || Sbjct 16009 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 15950 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 15949 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 15920 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 16357 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 16298 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 16297 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 16238 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||||| ||||| |||| || ||| || || Sbjct 16237 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 16178 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 16177 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 16148 >seq3898 Length=1846 Score = 154 bits (170), Expect = 2e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 1525 CACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 1584 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 1585 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 1644 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||||| ||||| |||| || ||| || || Sbjct 1645 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTT 1704 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 1705 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 1734 Score = 145 bits (160), Expect = 9e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 31 CACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 90 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 91 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 150 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||||| ||||| || | || ||| || || Sbjct 151 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACTTCGAGCGCGATCGTCTT 210 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| ||||| Sbjct 211 GCCGGTCAGAGTCTTCACGAAGATCTGCAT 240 >seq3958 Length=1797 Score = 141 bits (156), Expect = 1e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| | || |||||||||||||||||||| Sbjct 477 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAA 536 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | || |||||||||| ||||||| ||| | | Sbjct 537 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 596 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||||| || || || | | ||| || ||||| || || || || || Sbjct 597 CTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCAC 656 Query 46582 AAAGATTTGCATTTTG 46597 ||||||||||| ||| Sbjct 657 GAAGATTTGCATGTTG 672 >seq3040 Length=2570 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| | || |||||||||||||||||||| Sbjct 963 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAA 1022 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| ||||||| ||| | | Sbjct 1023 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 1082 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||||| || || || | | ||| || ||||| |||||||| || || Sbjct 1083 CTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCAC 1142 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 1143 GAAGATCTGCAT 1154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565186963305600