Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3114 349 4e-91 seq887 221 2e-52 seq1066 168 8e-37 seq611 152 7e-32 >seq3114 Length=2484 Score = 349 bits (386), Expect = 4e-91 Identities = 761/1130 (67%), Gaps = 21/1130 (2%) Strand=Plus/Plus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || || || | ||| ||||||||||| |||||||||||||| || | || ||||| || Sbjct 1031 GCCTGCACAGCCGCGCCGTATGCGACGGCCTCATCGGGGTTGATGCTCTTGTTCAGCTCC 1090 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 || ||| || || || || | | || | || ||||| || || || || || Sbjct 1091 TTGCCGCCGAAGTAGTCGGAGACGAGGCTCTGCACCTTGGGGATACGGGTGGAACCGCCC 1150 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 |||| || | || | ||| || || ||||| | || || ||| Sbjct 1151 ACCAGCACTACGTCGTGCACGGCGCGCTTGTCCATCTTGGCATCGGAGAGCACGCGCTCG 1210 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTA 7267 || || | || ||||||| | ||| ||||| ||||| || || || ||||| Sbjct 1211 ACGGGCTGCACGGTGCTACGGAAGAGGTCACCGCACAGCTCCTCGAAGCGGGCGCGGGTG 1270 Query 7268 ATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCC 7327 |||| | | ||| || | | |||| | | | || || || || || | || | | Sbjct 1271 ATGGTGGACTGGAAGTCGATGTTGTCGAAGAGGGCGTCGATCTCGATCGTGGCCTGGGTC 1330 Query 7328 GTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGC 7387 | || || | ||| ||||| |||||||| || || || || | || || ||||| || Sbjct 1331 GCGGACGAGAGCGTGCGCTTGGCGCGCTCGCAGGCAGTGCGGAGGCGGCGGAGGGCGCGG 1390 Query 7388 GGGTTACCGGAAATATCTTT---CTTATGTTTACGTTTAAACTCTTCAG---AGAAGTGT 7441 |||| |||| | || || ||| | || || || ||||| || | |||||| | Sbjct 1391 TGGTTGCCGGCGAGGTCCTTGCCCTTGTTCTTGCGCTTGAACTCATCGGCGAAGAAGT-T 1449 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 | | ||| | |||||| || |||||||| | ||| ||||| |||||||| || ||| Sbjct 1450 C--ACGAGGCGGTTATCGAAGTCCTCACCACCGAGGTGGGTATCACCCGCGGTGGCCTTG 1507 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || ||||| || || || || | | || | ||||| |||||||| ||||| || Sbjct 1508 ACCTCGAAGATGCCGCCGTCGATCGTGAGCAGGGTCACATCGAACGTACCGCCACCGAGA 1567 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| |||||| | || | ||| | ||| ||||| ||||||||||| || Sbjct 1568 TCGAAGATGAGCACGTTCTTCTCCTTGTCGTCACCCTTGTCGAGGCCGTACGCGATGGCG 1627 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATC 7680 || || || || || || || || || || || || || ||||| || || | ||||| Sbjct 1628 GCGGCGGTGGGCTCGTTGATGATGCGGAG-CACCTCGAGACCAGCGATCGTGCCGGCATC 1686 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || || || || || || || ||||| |||||||| || || || ||||| || | | | Sbjct 1687 CTTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGCACGGTGACGACGGCCTTCTT 1746 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGA 7800 ||| | ||| ||||| || | |||||| | || ||||| ||| || |||||||| Sbjct 1747 GACCTGCTTGCCGAGGTAAGCCTCCGCGGTCTCCTTCATCTTGAGGAGCACCATCGAGCT 1806 Query 7801 AATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAAT-CAACTTC-AATCATGGGT 7858 ||||| |||| | || || | || |||| || | || || | || || || Sbjct 1807 GATCTCCTCAGGGGTGAAGGTCTTGGACTCGCCGTGGAACTGCACCTGCAAAACAGGGAG 1866 Query 7859 TTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT 7918 | || | ||||| ||||| | | ||| | ||||| ||| ||||||| Sbjct 1867 GT-----CACCCTTGGGGACCACCTTGAAGGGCCAGTGCTTCATGTCGCTCTGGACCTCG 1921 Query 7919 TGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTC 7978 |||| ||||| | ||||| || ||||| || || || || ||||| | ||||||| Sbjct 1922 GAGTCCTTGAACTTGCGGCCGATCAGGCGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTC 1981 Query 7979 ATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCG 8038 || || |||||||| || || || ||||| ||||| || || || |||||| Sbjct 1982 ATCGCGACCTGGTTCTTGGCGGCATCGCCGATCAGACGCTC---GGAGTCGGTGAACGCG 2038 Query 8039 ACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTT 8098 ||||| || |||||||| || || || |||||||||||||| || || || || ||||| Sbjct 2039 ACGTAGGAGGGGGTCGTGCGGTTACCCTGGTCGTTCGCAATGATCTCCACACGCTCGTTC 2098 Query 8099 TGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| ||||| ||||| || || || || || | ||| ||||| || || Sbjct 2099 TGCCACACGCCCACGCAGGAGTAGGTCGTGCCCAGATCGATACCAATAGC 2148 >seq887 Length=7718 Score = 221 bits (244), Expect = 2e-52 Identities = 471/696 (68%), Gaps = 18/696 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || || || | || || || |||||||| || || || || |||| || Sbjct 1850 ATCGAAGTCCTCGCCGCCGAGATGGGTGTCACCCGCGGTGGCCTTCACCTCGAAGACGCC 1791 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | || || ||||| |||||||| || || ||||| || ||||| || Sbjct 1790 GTTGTCGATCGTCAGCAGCGTCACATCGAACGTACCGCCGCCAAGGTCGAAGATGAGCAC 1731 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | | | | ||||| || | ||||| ||||| || ||||| || || || Sbjct 1730 GTTCTTCTGGC------TCTTCTTGTCCATGCCGTAGGCGATGGCGGCCGCGGTGGGCTC 1677 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 || || || || || ||| | |||||| || || | ||| || || || ||||| || Sbjct 1676 GTTGATGATGCGCAGCACA-TCCAGGCCCGCGAT-GACGCCAGCGTCCTTGGTCGCCTGG 1619 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || || ||||| ||||||||||| ||||| |||||||| | || || |||| ||| Sbjct 1618 CGCTGGGAGTCGTTGAAGTAGGCCGGCACCGTGACGACCGCCTTGGTCACCTTCTCGCCG 1559 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 || || | ||||| | |||||||| ||| || ||||| || ||||| || | Sbjct 1558 AGGTAGGCCTCCGCCGTTTCTTTCATCTTGACGAGCACCATGGAGCTGATCTCCTCCGGG 1499 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCC-GCAGCACC 7872 | || || | || | | ||||| || | | || || || | |||| Sbjct 1498 GAGAAGGACTTGTGCTGCCCTTGGTACTCAACCTCCACGACCGGCTTGCCCTCCTTCACC 1439 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | | ||||| | | ||| | ||||| ||| || | | |||| ||||| Sbjct 1438 G----TCACCTTGAAGGGCCAGTGCTTCATGTCGCTCTGCAGGTCGGGGTCGTCGAACTT 1383 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| | ||||| || || || | ||||| | ||||||||| || | ||||| Sbjct 1382 GCGGCCGATCATGCGCTTGGCGTCGAAGATGGTGTTGTGGGGGTTCATCGCGATCTGGTT 1323 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || || || |||| || || || | || || || |||||||| || ||||| Sbjct 1322 CTTGGCGGCATCGCCGACGAGGCGCTC---CGTCTCGGTGAAGGCGACGTAGGAGGGGGT 1266 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 ||| || || || ||||||||||| ||||| || || ||||||||| |||||||||| Sbjct 1265 CGTGCGGTTACCCTGGTCGTTCGCGATAATCTCGACCTGGTCGTTTTTGAAGACGCCGAC 1206 Query 8113 GCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||| || || || || || | || |||||||| || Sbjct 1205 GCAGGAGTAGGTCGTGCCGAGGTCGATACCGATGGC 1170 >seq1066 Length=6750 Score = 168 bits (186), Expect = 8e-37 Identities = 309/448 (69%), Gaps = 11/448 (2%) Strand=Plus/Plus Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||| | || || || ||||| || | | |||| | ||| ||||| || | Sbjct 3 TCGTTGAAGTAG-CGGGCACGGTGACGACGGCCTTCTTGACCTGCTTGCCGAGGTAAGCC 61 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 |||||| | || ||||| ||| || |||||||| ||||| |||| | || Sbjct 62 TCCGCGGTCTCCTTCATCTTGAGGAGCACCATCGAGCTGATCTCCTCAGGGGTGAAGGTC 121 Query 7823 TTCGTTTCACCGTTAAAAT-CAACTTCAAT-CATGGGTTTATCCGCAGCACCGGGGATAA 7880 || | || |||| || | || || ||| || || | || | ||||| | Sbjct 122 TTGGACTCGCCGTGGAACTGCACCTGCAAAACAGGGAGGT-----CACCCTTGGGGACCA 176 Query 7881 CCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGA 7940 |||| | | ||| | ||||| ||| ||||||| |||| ||||| | |||| Sbjct 177 CCTTGAAGGGCCAGTGCTTCATGTCGCTCTGGACCTCGGAGTCCTTGAACTTGCGGCCGA 236 Query 7941 TAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCG 8000 | || ||||| || || || || ||||| | ||||||||| || |||||||| || | Sbjct 237 TCAGGCGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCATCGCGACCTGGTTCTTGGCGG 296 Query 8001 CGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGAT 8060 | || ||||| ||||| || | | || ||||||||||| || |||||||| || | Sbjct 297 CATCGCCGATCAGACGCTCGGAGT---CGGTGAACGCGACGTAGGAGGGGGTCGTGCGGT 353 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || |||||||||||||| || || || || ||||| ||||| ||||| ||||| || | Sbjct 354 TACCCTGGTCGTTCGCAATGATCTCCACACGCTCGTTCTGCCACACGCCCACGCAGGAGT 413 Query 8121 ACGTTGTTCCTAAATCAATACCGATTGC 8148 | || || || | ||| ||||| || || Sbjct 414 AGGTCGTGCCCAGATCGATACCAATAGC 441 >seq611 Length=9752 Score = 152 bits (168), Expect = 7e-32 Identities = 232/328 (71%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | || || || || |||||| || || |||| || Sbjct 1876 ATCGAAGTCCTCGCCACCGAGATGGGTGTCGCCGTTGGTCGCCACAACCTCGAAGAAGCC 1817 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | | || || | | | || ||||| |||||||| || || || || || | ||| | Sbjct 1816 TTCGTCGATCGTGAGGAGGGACACATCGAACGTACCGCCGCCGAGATCGAAGACGAGAAT 1757 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | || | | ||||| ||| ||||||||||| || || || || ||||| Sbjct 1756 GTTCTTCTCACCCGCCTTGTT------GAGGCCGTACGCGATGGCGGCAGCAGTCGGTTC 1703 Query 7636 ATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || || || | ||| ||| || |||||||| || | ||||| ||||| | || | Sbjct 1702 GTTGATGATGCGGACGAC-GTTAAGCCCAGCAATCGTACCAGCATCCTTCGTGGACTGAC 1644 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | |||| ||||| ||||||||||||||||| ||||| |||| | | || |||| |||| Sbjct 1643 GCTGCGCGTCGTTGAAGTAGGCCGGGACCGTCACGACGGCGTTCTTTACCTTCTCGCCGA 1584 Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782 |||| | ||| ||||| || ||||| || Sbjct 1583 GATAGGTTTCTGCGATCTCCTTCATCTT 1556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635075002915200