Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq303 113 5e-20 seq557 84.2 3e-11 >seq303 Length=13852 Score = 113 bits (124), Expect = 5e-20 Identities = 560/883 (63%), Gaps = 43/883 (5%) Strand=Plus/Minus Query 106444 ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATC 106503 ||| ||| |||| | | ||||| || ||||| ||||| || |||||||| || Sbjct 11755 ATTCACAAACTTGGACACCGCGATGGAGGCCAAGTTGCACACCGCCGTCTCCTCGGGGGA 11696 Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 || ||||| | ||| || || |||| |||||| | ||| || || || | |||||| || Sbjct 11695 GGTATACTCAATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCGAGATTCTTCTG 11636 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||| | ||||||||| |||||||| | |||| | ||| || ||||| |||| Sbjct 11635 GTTGGACTTCTCGTTGCACGCGTCCTTGTACAACATGAACGGCACGCCTGTCTCGATCTG 11576 Query 106624 TGACTTGAGAATTGCCTTCCACACATCG-GCGGCTGGTACAATGG--CGTTGGCCCGT-C 106679 |||| ||| || || ||| | || ||| |||| |||| || |||| | | Sbjct 11575 GGACTCGAGGATGGCGAACCAGAGCTCCTGCGCCTGG----ATGGTGCGCACGCCCATGC 11520 Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739 ||| ||||||||| | |||||| || |||| ||| || |||| ||| | Sbjct 11519 CCTTCGCCTCGTAGTCCTCGTAGAGCTGCTCGAACTTCTCGCCGTAGCAGTCGCTGAGGC 11460 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATG 106798 | || | | ||| || | | | ||| ||| || | ||| ||| | ||||||||| Sbjct 11459 CGGGCGTCGTGTTGGGGTCCATCAACGTCCACTTGCCCTCGCTCTTCA-CGCGCTTCATG 11401 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 106858 || || || || ||||| || | | || || || | | | || |||| ||| Sbjct 11400 AACAGATCGGGGATCCAGAGCGCGTAGAACAGGTC---GCGCGCACGCTGGTCGT--CCT 11346 Query 106859 TGGTTGAGTCGTAACTCA-----AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGAT 106913 || | || | ||| || ||||| | ||| ||||||||||| ||||| || | Sbjct 11345 TGCCGGTGTTGCGCTTCATGAGCAGAAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGT 11286 Query 106914 AGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 106970 | | |||| | ||||| || || || | |||| || ||||| || || | Sbjct 11285 ACATGGCGAAGGCACCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCCGTATTAT 11226 Query 106971 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAG 107030 | | || || | ||| || || | || | || || || || || | | Sbjct 11225 TCCACACACGGATCATCGGCATGAGGCCGTTGGACGTGCCGTTCGTGCC-------GGCG 11173 Query 107031 ATTTATTGGCT-CTCACATCATGGAT---------GTGCATCCCAATACCCCCAGCCCAC 107080 || || ||| | | | || |||| ||| || ||||| || || || | Sbjct 11172 ATGTA---GCTGCCCGCGGCACGGATGTTGTGCACGTGGATGCCAATGCCGCCGGCGGCC 11116 Query 107081 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 107140 || ||| || |||||| | || || | ||||| || | || ||| ||||| Sbjct 11115 TTGCTGATCACGGCGCACTCCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCATCCTTC 11056 Query 107141 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 107200 | || | |||||||| | |||||| || | || || || || ||||||||||| Sbjct 11055 ATCGCCACCAGGAAGCACGAGCTCATCTGGGGCTTGGGGGTGCCGGCGTTGAAGAGGGTG 10996 Query 107201 GGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCA 107260 ||||| || || |||| | || |||||||| | ||| || || || Sbjct 10995 GGTGTCGCATGGGTGAAGAAGCCCTGGGACATGAGGGTGTAGGTGCGGCGCACGCGGTCG 10936 Query 107261 ATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | ||| | ||||||||||| || |||||||||| || ||||| Sbjct 10935 AGGTCCTTGCCGTGGATGCCAATCGCCACACGCAGAATCATGT 10893 >seq557 Length=10176 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| Sbjct 9739 GCTCCTATAGTGTAGTGGTTATCACTCCGGACTTTGAATCCGGAAACCCAGGTTCGAATC 9798 Query 136224 CAGGTAGGAGC 136234 | ||||||||| Sbjct 9799 CTGGTAGGAGC 9809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589927111747200