Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3898 96.9 2e-15 seq3958 91.5 1e-13 seq3874 87.8 1e-12 seq3040 87.8 1e-12 seq207 87.8 1e-12 >seq3898 Length=1846 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || | || || ||||| || || ||||| Sbjct 50 TCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAG 109 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 110 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 169 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || |||| | || || || || || ||||||||||| Sbjct 170 TCGATCGTGTCGCTCGCCTCCACTTCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCACG 229 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 230 AAGATCTGCAT 240 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || | || || ||||| || || ||||| Sbjct 1544 TCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAG 1603 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 1604 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 1663 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || || | | || || || || || || |||||||| Sbjct 1664 TCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 1723 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1724 AAGATCTGCAT 1734 >seq3958 Length=1797 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || || ||||| || ||||| || Sbjct 478 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAG 537 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 538 ATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 597 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| || |||| || || || || || || || |||||||| Sbjct 598 TCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCACG 657 Query 34971 AAGATCTGCATATTCGTAGA 34990 ||||| ||||| || |||| Sbjct 658 AAGATTTGCATGTTGATAGA 677 >seq3874 Length=1858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || | || || ||||| || || ||||| Sbjct 1634 TCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAG 1693 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 1694 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 1753 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || || | | || || || || || || |||||||| Sbjct 1754 TCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 1813 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1814 AAGATCTGCAT 1824 >seq3040 Length=2570 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || || ||||| || ||||| || Sbjct 964 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAG 1023 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 1024 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 1083 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| || |||| || || || || || || || |||||||| Sbjct 1084 TCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACG 1143 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1144 AAGATCTGCAT 1154 >seq207 Length=16371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || | || || ||||| || || ||||| Sbjct 16110 TCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAG 16051 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 16050 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 15991 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || || | | || || || || || || |||||||| Sbjct 15990 TCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 15931 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 15930 AAGATCTGCAT 15920 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || | || || ||||| || || ||||| Sbjct 16338 TCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAG 16279 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 16278 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 16219 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || || | | || || || || || || |||||||| Sbjct 16218 TCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 16159 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 16158 AAGATCTGCAT 16148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324604796883840