Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2024 188 6e-43 >seq2024 Length=3994 Score = 188 bits (208), Expect = 6e-43 Identities = 408/607 (67%), Gaps = 10/607 (2%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| || ||||| |||||||| | | |||||||||||| || ||||| ||||| Sbjct 2293 AGCTGCTCCTGCAGCGCCTCCACGTGGTTCTTGTAGACGTGAGCATCCCCCAGCGTGTGC 2352 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 || | ||| ||||| | ||||||||| | | || |||| ||||||| | ||| Sbjct 2353 ACGAGCTCGCCCGGCTTGAGCCCGGTGGCCTTGGCGATCAAAATGGTGAGGAAGGCGTAC 2412 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||||||||||||||| || ||||||||||| || | | |||||| ||| || Sbjct 2413 GAGGCGATGTTAAAGGGCACACCGAGCCCCATATCGCAACTGCGCTGGTATAGCATGCAG 2472 Query 29971 GAGAGCTC-TCCGTC-----GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGA 30024 ||||| | ||| | ||||||| ||||| | | | ||||||||| || || Sbjct 2473 CTCAGCTCCTGCGTGTTCGTGTTCACGTAGAACTGCCCGAGGAGGTGGCACGGCGGGAGG 2532 Query 30025 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 30084 ||||| | ||| | ||||||||| ||| | || | || | ||| | ||| Sbjct 2533 GCCATCTTGTCCAGCGCGGCGGGGTTCCACGCGGTGAAGAGCAGCCGGCGGTCGTTCGGG 2592 Query 30085 TTGTTCCTGATGAGGTCCACG--GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30142 || || ||| || ||| ||| || | |||||| || ||| | || ||||| Sbjct 2593 TTCGTCTTGAGCGTCTCGACGATGCGCTTG--ATCTGATCGACGCCCTTGCCGTCGTAGT 2650 Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 | | | |||||||| || ||||| || | ||||||||| ||||||||||| | Sbjct 2651 TCTCGTGGAAGGAGGTGTACTCGGCCCCGAAGTGGCGCCACTGGAAGCCGTACACCGGCC 2710 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 | ||||| ||| || |||| || ||| | |||| | ||| | | | |||| Sbjct 2711 CGAGGTCCATCTCCTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCCGT 2770 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 || |||||||||| | || ||||| |||| |||| |||| ||| || || || | Sbjct 2771 TGTCGTCCCAGATGTGGACGCCCTTGTCGGCGAGCAGCTTGGCGTTGGTCTCGCCCCTCA 2830 Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGG 30382 |||||| | |||||||| |||| | ||| ||||| | ||| |||||||| || | Sbjct 2831 GGAACCAAATGAGCTCCTCGGAGACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGCAGCG 2890 Query 30383 GAAACTG 30389 | | ||| Sbjct 2891 GCAGCTG 2897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408581345403440