Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq235 147 3e-30 >seq235 Length=15629 Score = 147 bits (162), Expect = 3e-30 Identities = 430/656 (66%), Gaps = 50/656 (8%) Strand=Plus/Plus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGC-CTTGG 139563 ||||||||| ||||| | ||||| | ||||| ||||||||||| || | ||| | Sbjct 6368 GCGGCACTCCACGCCCTGCGTCGCGGCCACGTGGTCAGCCAGCGTGAAG-CGTCGCTTCG 6426 Query 139564 ---CGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGG 139620 || | ||| | | |||||| || |||||||| || |||||| | | | Sbjct 6427 TCTCGCCCCTGCTGTA---GCGCCGCCCTGCACCGTGCGAACAGGAGCAGTAGCTGCTCG 6483 Query 139621 CGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGA 139680 ||||||| || |||||||| |||||| || |||||||| || ||||||| | | | Sbjct 6484 CGTTGCCTTTCCCGCGCACAATGTAGCTGAGCGCACCCATCGACCCCGGGATGACGGCAA 6543 Query 139681 ACTGGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTC-GAAG 139739 || | ||| || ||||| || || |||||||| | | ||| |||| | || | Sbjct 6544 GCTCGCCCTGCTTGGCCGAAGTGGCCCCTTTGCGGGTGAGCCACACCGCCTCGCCAGACG 6603 Query 139740 TG-----------GAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTT-- 139786 | |||| || | |||||||||||||||||||||||||| | | | Sbjct 6604 TCTCGTCCACCACGAACCGCTCC---ACGTAGTTGTGGTGGCAGTTCACCGCATGCGTAC 6660 Query 139787 -GTCCGTCTTGAAGGG------CGGCAGGCCCGAGGCGCGCATGGCGTCCAGGACCCGGA 139839 |||| || ||||| ||| || | | ||||| |||||| ||||| | Sbjct 6661 CGTCCACCTGGAAGGTGACGTTCGGAGGGAGGGCGCGGCGCACGGCGTCGAGGACA---A 6717 Query 139840 TCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC---TGACCCCAGGCGACGGCTTCCA 139896 | |||||| ||| | ||| | | || | || |||| | || |||| | Sbjct 6718 ACTCCATCATGAGGCGCCGGTTCCACATGGCGTACGTTTGCGCCCACTCCACCGCTTGAA 6777 Query 139897 CGTAGTCGTAGAATTCCGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCT 139956 ||| || | ||| | || | ||| || || || | || || ||||||| | || | Sbjct 6778 TGTACTCCTTGAAGTGCGCCGTGCCCTCGGAAAGGTAAGCAAGATCCTTGTGGGGCAGGG 6837 Query 139957 TCTGACCGTCCCGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGG 140016 || || | ||| ||| | || ||| |||| || || | | ||||||| Sbjct 6838 AGTGGA--TCAGGTCGCC-CATGTCTTTCTGCGCCATCTCAATATAGGTGCTGCCGATGC 6894 Query 140017 TGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---------GGT 140067 |||||||| |||||||||||| ||||| ||||| ||||| ||| ||| ||| Sbjct 6895 GGTTGCCGATGCCGCGCGAGCCGGAGTGCAGCATGACCCACACGTGCTTTTGGACGGGGT 6954 Query 140068 CCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGG 140123 | | ||||||||||| |||||||||||||| |||| ||| |||||||| || ||| Sbjct 6955 CGTTATCGAGGCAGACTTCGATGAAGTGGTTCCCGCTGCCAAGCGTGCCGAGATGG 7010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715710864384000