Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq303 307 2e-78 seq5767 219 8e-52 seq3519 138 2e-27 seq2484 131 3e-25 >seq303 Length=13852 Score = 307 bits (340), Expect = 2e-78 Identities = 1020/1566 (65%), Gaps = 48/1566 (3%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA 212753 ||||||| ||||| |||||| ||| | | | | | | || |||||||| |||| Sbjct 12522 AGGTTCATCGACTGCGACTGGTCAATGTACTTGCCGCGGGCGGCCGCCATGTCGATGAGG 12463 Query 212754 TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCG 212813 | ||| |||| |||||||||||| | | | || |||||||| |||| | | Sbjct 12462 GTGCGCTGCGAGATCTCCCACACGGTGCGGTACAGCTCGCGCAGGTCCTCCGGGATGTCC 12403 Query 212814 GGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAG 212873 | ||||||||| ||||| || || | | || ||| || | ||| ||||| Sbjct 12402 ATCACGTTCTGCACGGACCCGTTGAAGGTGATGATCTCGTTGCGGATCTTGTCGCTCCAG 12343 Query 212874 AGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAG 212933 || || | | ||| | | || |||| |||||| | |||| || || Sbjct 12342 AGACCGCGCTTGATGAGGTCCATCACGAGGTACTTGTTGACGACGGGGAACTCGCCGCTT 12283 Query 212934 AGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGA 212993 ||||| | | | ||| | ||| || ||| ||||||||| || |||||||||||| ||| Sbjct 12282 AGCACACGGCGCACGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTCCCAAGA 12223 Query 212994 ATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 ||||| | || ||| |||||||| || || | ||| || ||| | || ||| | Sbjct 12222 ATCTGCGACGTCGAGGCGGTGGGCATCGGCGCGAGCAGCAGCGAGTTGCGCATGCCGACC 12163 Query 213054 TCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTC 213113 || ||| | | ||| | |||||| ||| | ||| | || ||| | | | Sbjct 12162 TCCACGACGCGCTTTTTCAGCGCGTCCCAGTTCCAGCGGCC-----GCTCTTCGGCGT-C 12109 Query 213114 ACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAG 213173 ||| ||||| ||| ||||||| || || | |||||||||||| | | | | Sbjct 12108 TCGTGCCACAGGTCGAACTGCAGCATACCCTCCGAGGCGGGGCTGCCCTTGAAGGTCTCG 12049 Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 |||||||| | | ||||| || ||||| || || |||||||||||||||||| Sbjct 12048 TAGGGGCCCTCGACGGCAGCCAGGTCCACGGACGACTCCACGGCAGCGTAGTAGATGGTC 11989 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATC---ATCATG 213290 || || || ||| |||||| || ||||| ||| ||||||||||| | || | Sbjct 11988 TCGAAGATGTCCTCGTTGAGACGCTGCGCCTCCGGGCTCGTGAAGGGCAGGCGGAGCAGG 11929 Query 213291 CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTA 213350 | ||| | || || || ||||| || || | ||||| ||| | || | || ||| Sbjct 11928 CA---GAAGGCGTCGGCGAGGCCCTGCACGCCAAGGCCGACGGGGCGGTTGCGCATGTT- 11873 Query 213351 GACTTGGAGCACTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCG 213409 | || || | ||| | |||||| |||| | ||| |||| ||| |||||| Sbjct 11872 GCTGCGGCGCGCCGTCTCGACGGGGTAGTAGTTCCGGTCTATGACACGGTTCAGGTTGAA 11813 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG 213469 |||| | | || || || | | ||| || ||| | |||| ||| | || | Sbjct 11812 GGTGATCTCCTTCGTCACCTCGTACAGTAGCTGGTGGTCGAACTCGTTCTTCTCGCGATT 11753 Query 213470 CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGT 213529 |||||||| | || |||||| ||||| |||||| || ||| ||||| | | || Sbjct 11752 CACAAACTTGGACACCGCGATGGAGGCCAAGTTGCACACCGCCGTCTCCTCGGGGGAGGT 11693 Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 ||||| || ||||| |||||||||||| ||| ||||||||| || |||| ||||| Sbjct 11692 ATACTCAATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCGAGATTCTTCTGGTT 11633 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGA 213649 ||||| ||||| | |||||||| | |||| | || || ||||| | |||||| Sbjct 11632 GGACTTCTCGTTGCACGCGTCCTTGTACAACATGAACGGCACGCCTGTCTCGATCTGGGA 11573 Query 213650 CACCAGTATCTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCG 213708 | | || || | |||||| | |||| |||| || ||| || | | | Sbjct 11572 CTCGAGGATGGCGAACCAGAGCT-CCTGCGCCTGGATGGTGCGC---ACGCCCATGCCCT 11517 Query 213709 TAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCC---CCAGACCCTGTCCAGTC 213765 | |||||||| | |||||||||| | ||| | | ||| ||| | ||| || | Sbjct 11516 TCGCCTCGTAGTCCTCGTAGAGCTGCTCGAACTTCTCGCCGTAGCAGTCGCTG---AGGC 11460 Query 213766 CCG--GACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTC-ATCTCTGACTCTCTGCA 213822 | | | | | || ||| | ||| | |||| | || || ||| | || | || || Sbjct 11459 CGGGCGTCGTGTTG-GGGTC-CATCAACGTCCACTTGCCCTCGCTCT-TCACGCGCTTCA 11403 Query 213823 TGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTC 213882 ||||||| || |||| ||| |||||| ||||||||| | | | | |||||| | Sbjct 11402 TGAACAGATCGGGGATCCAGAGCGCGTAGAACAGGTCGCGCGCACGCTGGTCGTCCTTGC 11343 Query 213883 CAGAGTTTTTGCGC----AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATG 213938 | | | |||||| || | ||||| || ||||||||||||||||||||||| | | Sbjct 11342 C---GGTGTTGCGCTTCATGAGC-AGAAACTCGAAGATGTCCGCGTGCCACGGCTCGAGG 11287 Query 213939 TAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATG 213995 || ||||| ||||| ||| | ||| ||||||||| ||||| | |||| | Sbjct 11286 TACATGGCGAAGGCACCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCCGTATTA 11227 Query 213996 TTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATAC 214055 || | | || | | || | || ||||||||| ||||| || || || || || Sbjct 11226 TTCCACACACGGATCATCGGCATGAGGCCGTTGGACGTGCCGTTCGTGCCGGCGATGTAG 11167 Query 214056 GAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATC 214115 ||| | ||| | | |||| || | || || ||||| |||||| |||| |||| Sbjct 11166 CTGCCCGCGGCACGGATGTTGTGCACGTGGATGCCAATGCCGCCGGCGGCCTTGCTGATC 11107 Query 214116 ATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGC 214175 | |||||| | | | || || |||||| | ||||||||||| | | || | Sbjct 11106 ACGGCGCACTCCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATCGCCACC 11047 Query 214176 AAGAAGC---AGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTG 214232 | ||||| ||||| | ||||||| ||| | ||| | |||||| || ||||| | Sbjct 11046 AGGAAGCACGAGCTC---ATCTGGGGCTTGGGGGTGCCGGCGTTGAAGAGGGTGGGTGTC 10990 Query 214233 GCATGG 214238 |||||| Sbjct 10989 GCATGG 10984 >seq5767 Length=966 Score = 219 bits (242), Expect = 8e-52 Identities = 568/857 (66%), Gaps = 19/857 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | |||||| |||| Sbjct 31 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTC 90 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957 ||||||| ||||||||||| | ||| || | | || |||| | | | |||| Sbjct 91 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCT-TCTCGAGCCCGAGCGACACGAGCA 149 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||||||| | ||||||||| |||||| Sbjct 150 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGC 209 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||||| || | || ||||||||||| || ||||| || | || Sbjct 210 GCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGG 269 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAGG 48134 ||||| ||| ||| ||| || | ||| || ||||||| ||||| Sbjct 270 CGAGCACGCG---CTCGCGGGGCAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAGG 326 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||||| ||| ||||| || ||||||| ||||| |||| ||| || | Sbjct 327 CGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCGG 386 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| || || | || ||||||||||| || | ||| ||||| ||||||||||||| Sbjct 387 GCATCACGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGC 446 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || |||| | ||| ||| || ||| || | ||||| Sbjct 447 CCTCGACGGCGGCGAAGCCGATGAGGCGCTCCTGGAAGGAGGCGCCGCTGCC---GATCC 503 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGA 48371 || | ||||||| |||||||||| |||||| || || |||| ||||| | | | Sbjct 504 AGCGCACGGCCCAGTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGCGTGCAGCA 563 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | || ||| ||| | ||| | | ||||| ||||||| | ||| ||| Sbjct 564 GGCGCAGCTT---CTCGGCGCTGTCGGTGATGTAGGTGTCGAGCAGCACCGAGTAGGTCT 620 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || || |||||| ||||||||||| | ||||| | || Sbjct 621 CGGAGTGGATGTTCTCCATCATGAGCTGGAAGCCGTAGAAGGCGCGCGCCTCGGGGATCT 680 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 || || || ||| | | | || ||||| ||| || || || | || | Sbjct 681 TGACGTCGGTCATGAAGCGCACGGCGAGGTTCTCGACGACGATGCCGTCGCTGCCGGCGA 740 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 ||||||| || || || || | ||| || ||||| | |||||| |||| | Sbjct 741 AGAAGGCGAGCACGTGCTTGATGAAGTGCTGCTCGCCCTCGGTGAGCTTGACCCAGTCGG 800 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTG 48670 | ||| |||||||||| | || |||| ||||||| | | | | ||| | ||| Sbjct 801 CGAGGTCGCTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGC-TCCTTG 859 Query 48671 TACATGCCCCATATGTC 48687 ||| ||| ||| ||||| Sbjct 860 TACTTGCGCCAGATGTC 876 >seq3519 Length=2121 Score = 138 bits (152), Expect = 2e-27 Identities = 280/412 (68%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | |||||| |||| Sbjct 1714 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTC 1773 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957 ||||||| ||||||||||| | ||| || | | || |||| | | | |||| Sbjct 1774 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCT-TCTCGAGCCCGAGCGACACGAGCA 1832 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||||||| | ||||||||| |||||| Sbjct 1833 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGC 1892 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||||| || | || ||||||||||| || ||||| || | || Sbjct 1893 GCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGG 1952 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAGG 48134 ||||| ||| ||| ||| || | ||| || ||||||| ||||| Sbjct 1953 CGAGCACGCG---CTCGCGGGGCAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAGG 2009 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||||| ||| ||||| || ||||||| ||||| |||| ||| || | Sbjct 2010 CGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCGG 2069 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 |||| || || | || ||||||||||| || | ||| ||||| ||||| Sbjct 2070 GCATCACGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAA 2121 >seq2484 Length=3244 Score = 131 bits (144), Expect = 3e-25 Identities = 264/388 (68%), Gaps = 8/388 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | |||||| |||| Sbjct 385 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTC 326 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957 ||||||| ||||||||||| | ||| || | | || |||| | | | |||| Sbjct 325 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTGCT-TCTCGAGCCCGAGCGACACGAGCA 267 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||||||| | ||||||||| |||||| Sbjct 266 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGC 207 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||||| || | || ||||||||||| || ||||| || | || Sbjct 206 GCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGG 147 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAGG 48134 ||||| ||| ||| ||| || | ||| || ||||||| ||||| Sbjct 146 CGAGCACGCG---CTCGCGGGGCAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAGG 90 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||||| ||| ||||| || ||||||| ||||| |||| ||| || | Sbjct 89 CGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCGG 30 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAA 48222 |||| || || | || ||||||||||| Sbjct 29 GCATCACGCCACGCTTCTTGAGCCAGAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931448030515200