Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5767 194 3e-44 seq303 163 5e-35 seq3519 136 7e-27 seq2484 129 1e-24 >seq5767 Length=966 Score = 194 bits (214), Expect = 3e-44 Identities = 527/805 (65%), Gaps = 13/805 (2%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG 25581 || ||||| || |||| || ||| | | || |||| | || || | | ||||||| Sbjct 828 GAGGAGATCGACCTGGGCAGCGACCTCGCCGACTGGGTCAAGCTCACCGAGGGCGAGCAG 769 Query 25582 CATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAAT 25641 || || ||||| ||||| | || ||||| || | | || || || || |||||| Sbjct 768 CACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTCGTCGAGAAC 709 Query 25642 CTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTC 25701 || || | | |||| | || || || | ||||| |||||||| ||| Sbjct 708 CTCGCCGTGCGCTTCATGACCGACGTCAAGATCCCCGAGGCGCGCGCCTTCTACGGCTTC 649 Query 25702 CAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATT 25761 ||| | || || || | ||||| ||| || | ||| || || ||||| Sbjct 648 CAGCTCATGATGGAGAACATCCACTCCGAGACCTACTCGGTGCTGCTCGACACCTACATC 589 Query 25762 ACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAA 25820 || ||| |||||||| || | || ||| | |||||| || ||| ||| ||||| | Sbjct 588 ACCGACAGCGCCGAGA-AGCTGCGCCTGCTGCACGCCATCCAGACCATCCCCTGCATCCA 530 Query 25821 GAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCG 25880 || |||||| |||||| || |||||| |||| |||| | || ||||| Sbjct 529 GAAGAAGGCCAACTGGGCCGTGCGCTGGATCGGCAGCG---GCGCCTCCTTCCAGGAGCG 473 Query 25881 GCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCT 25939 || | | ||| || || || ||||||||||| ||| ||| || || ||| |||||| Sbjct 472 CCTCATCGGCTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCT-CCATCT 414 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCA 25999 ||||||||||| || || ||||||||||| ||| ||||||||||||| Sbjct 413 TCTGGCTCAAGAAGCGCGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATCTCGC 354 Query 26000 GGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA 26059 | |||||||| || |||| || || |||||||||||||||| ||||| | |||| Sbjct 353 GCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATCAAGCACA 294 Query 26060 AACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119 | | | | ||| ||| | ||||||| || || || | ||||||||||||| Sbjct 293 AGCTGCCCCGCGAGCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAGT 234 Query 26120 TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAAT 26179 | | ||||||||| | ||||||||||| | Sbjct 233 TCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGT 174 Query 26180 ACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 |||| |||| || ||||||| ||||| ||| | ||| || |||| | | ||||| Sbjct 173 ACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTC-GCTCGGGCTCGAGAAGCACTACA-- 117 Query 26239 ACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCT 26296 |||| | ||||| |||||||| ||||| | || ||| | || ||||||||||||| Sbjct 116 ACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACCAACTTCT 57 Query 26297 TTGAAAAGAGGGTCGGCGACTATCA 26321 | || |||| ||||||||| || || Sbjct 56 TCGAGAAGAAGGTCGGCGAGTACCA 32 >seq303 Length=13852 Score = 163 bits (180), Expect = 5e-35 Identities = 897/1435 (63%), Gaps = 35/1435 (2%) Strand=Plus/Minus Query 221056 CTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTT 221115 |||| | || |||| ||| |||| ||||| | || || || | || | || ||| Sbjct 12367 CTCGTTGCGGATCTTGTCGCTCCAGAGACCGCGCTTGATGAGGTCCATCACGAGGTACTT 12308 Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || |||| || || ||||| | | | ||| | ||| || ||||| || Sbjct 12307 GTTGACGACGGGGAACTCGCCGCTTAGCACACGGCGCACGTAGATGTTGGAGGTGAAGGG 12248 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||| || || ||||| | ||| |||||||||||| || || | Sbjct 12247 CTCGAAGCACTCGTTGTTCCCAAGAATCTGCGACGTCGAGGCGGTGGGCATCGGCGCGAG 12188 Query 221236 CAGCAGACTGTTGCGCAGTCCGA-ATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCAC 221294 |||||| |||||||| |||| || | || | |||| |||||| || ||||| | Sbjct 12187 CAGCAGCGAGTTGCGCATGCCGACCTCCA-CGACGCGCTTTTTCAGCGCGTCCCAGTTCC 12129 Query 221295 AGTGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAG 221354 || | || | | || | | Sbjct 12128 AGCGGCCGCTC--TTC----GGCGTCTCGTGCCACAGGTCGAACTGCAGCATACCCTCCG 12075 Query 221355 ACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACT 221414 | | || || || | | | | ||||||||| || | | | ||| || | ||| Sbjct 12074 AGGCGGGGCTGCCCTTGAAGGTCTCGTAGGGGCCCTCGACGGCAGCCAGGTCCACGGACG 12015 Query 221415 GCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGG 221474 | || |||||||| |||||||||||| ||||| || |||||| | || ||||| | Sbjct 12014 ACTCCACGGCAGCGTAGTAGATGGTCTCGAAGATGTCCTCGTTGAGACGCTGCGCCTCCG 11955 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 | |||||||||| || |||| ||| ||||||| || ||||| || || | | Sbjct 11954 GGCTCGTGAAGGGCAGGCGGAGCAGGCAGAAGGCGTCGGCGAGGCCCTGCACGCCAAGGC 11895 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CG-CTTCTGGCACGGGATAAAAGTTGAC 221592 ||| ||| | || | | |||| | ||||| || | ||| | ||||| || |||| Sbjct 11894 CGACGGGGCGGTTGCGCATGTT-GCTGCGGCGCGCCGTCTCG-ACGGGGTAGTAGTTCCG 11837 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||| || | | ||| ||||| | ||||| | || ||||||| ||| |||||| Sbjct 11836 GTCTATGACACGGTTCAGGTTGAAGGTGATCTCCTTCGTCACCTCGTACAGTAGCTGGTG 11777 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | |||| | || ||| | | |||||| | | || | | Sbjct 11776 GTCGAACTCGTTCTTCTCGC------------GATTCACAAACTTGGACACCGCGATGGA 11729 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| ||||| ||| ||| || | |||||||| || ||||| || || || Sbjct 11728 GGCCAAGTTGCACACCGCCGTCTCCTCGGGGGAGGTATACTCAATAATCTCCGTGCACAG 11669 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| |||||||||||| || || | || || || ||||| ||| |||||||| Sbjct 11668 GTTGGAGCACTTGATGGTGCCGAGATTCTTCTGGTTGGACTTCTCGTTGCACGCGTCCTT 11609 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| | ||| || || |||| ||||| | ||| | | | || || | |||||| || Sbjct 11608 GTACAACATGAACGGCACGCCTGTCTCGATCTGGGACTCGAGGATGGCGAACCAGAGCTC 11549 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 ||| || | || | | | | |||| | || | | | || |||||| Sbjct 11548 -CTGCGCCTGGATGGTGCGCACGCCCATGCCCTTCGCCTCGTAGTCCTCG---TAGAGCT 11493 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 || ||||| || ||||| ||| ||||| || | || ||| ||||| Sbjct 11492 GCTCGAACTTCTCGCCGTAGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCATCAACG 11433 Query 222012 TCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 |||| |||| | | || || | || |||||| || || |||||||| ||||| | Sbjct 11432 TCCA---CTTGCCCTCGCTCTTCACGCGCTTCATGAACAGATCGGGGATCCAGAGCGCGT 11376 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || || || | | ||||| || ||| |||| |||| | ||| || ||||| Sbjct 11375 AGAACAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCATGAGCAGAAACT 11316 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || ||||| |||||||||||||| || || | ||| | || || ||||| || Sbjct 11315 CGAAGATGTCCGCGTGCCACGGCTCGAGGTACATGGCGAAGGCACCCTTGCGCTTACCGC 11256 Query 222189 CACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 | ||||||||||| | || | || | | || | |||| | || |||| Sbjct 11255 CGCCCTGATCCACGTAGCGGGCCGTATTATTCCACACACGGATCATCGGCATGAGGCCGT 11196 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308 |||| ||||| ||||| ||||| || |||| | | ||| | | Sbjct 11195 TGGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCCGCGGCACGGATGTTGTGCACGTGGA 11136 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 |||| || || |||||| || ||||| |||||| |||||| ||||| ||||| Sbjct 11135 TGCCAATGCCGCCGGCGGCCTTGCTGATCACGGCGCACTCCTTGAGCGTGTCGTAGATGC 11076 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 |||| || ||| ||||| | || ||| || || || |||||| | |||| || Sbjct 11075 CCTCAATGCTGTCATCCTTCATCGCCACCAGGAAGCACGAGCTCATCTGGGGCTTGGGGG 11016 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | |||||| || || ||||| | || || || ||| ||||| ||||| || Sbjct 11015 TGCCGGCGTTGAAGAGGGTGGGTGTCGCATGGGTGAAGAAGCCCTGGGACATGAG 10961 >seq3519 Length=2121 Score = 136 bits (150), Expect = 7e-27 Identities = 262/391 (67%), Gaps = 6/391 (2%) Strand=Plus/Minus Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || ||||||||||| ||| ||||||||||| Sbjct 2102 CCATCTTCTGGCTCAAGAAGCGTGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCA 2043 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGC 26053 || | |||||||| || |||| || || |||||||||||||||| ||||| | Sbjct 2042 TCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATCA 1983 Query 26054 TCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 ||||| | | | ||| ||| | ||||||| || || || | ||||||| Sbjct 1982 AGCACAAGCTGCCCCGCGAGCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGA 1923 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 ||||||| | ||||||||| | ||||||| Sbjct 1922 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 1863 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTC 26232 |||| ||||| |||| || ||||||| ||||| ||| | ||| || |||| | | | Sbjct 1862 GCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTC-GCTCGGGCTCGAGAAGCAC 1804 Query 26233 TACAGTACGCCT--AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290 |||| ||||| ||||| |||||||| ||||| | || ||| | || ||||||| Sbjct 1803 TACA--ACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACCA 1746 Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||| || |||| ||||||||| || || Sbjct 1745 ACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 1715 >seq2484 Length=3244 Score = 129 bits (142), Expect = 1e-24 Identities = 258/387 (67%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 ||||||||||||| || || ||||||||||| ||| ||||||||||||| Sbjct 1 CTTCTGGCTCAAGAAGCGTGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATCTC 60 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 | |||||||| || |||| || || |||||||||||||||| ||||| | || Sbjct 61 GCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATCAAGCA 120 Query 26058 CAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117 ||| | | | ||| ||| | ||||||| || || || | ||||||||||| Sbjct 121 CAAGCTGCCCCGCGAGCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGA 180 Query 26118 GTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCA 26177 ||| | ||||||||| | ||||||||||| Sbjct 181 GTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCA 240 Query 26178 ATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACA 26236 ||||| |||| || ||||||| ||||| ||| | ||| || |||| | | ||||| Sbjct 241 GTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTC-GCTCGGGCTCGAGAAGCACTACA 299 Query 26237 GTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTT 26294 |||| | ||||| |||||||| ||||| | || ||| | || ||||||||||| Sbjct 300 --ACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACCAACTT 357 Query 26295 CTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| || |||| ||||||||| || || Sbjct 358 CTTCGAGAAGAAGGTCGGCGAGTACCA 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928760275123200