Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3114 316 3e-81 seq3958 161 1e-34 seq1066 141 1e-28 seq611 98.7 1e-15 >seq3114 Length=2484 Score = 316 bits (350), Expect = 3e-81 Identities = 957/1473 (65%), Gaps = 10/1473 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 2148 GCTATTGGTATCGATCTGGGCACGACCTACTCCTGCGTGGGCGTGTGGCAGAACGAGCGT 2089 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| || |||| ||||| || ||||| || || || || ||||| || || || Sbjct 2088 GTGGAGATCATTGCGAACGACCAGGGTAACCGCACGACCCCCTCCTACGTCGCGTTCACC 2029 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || ||||| | || |||||||| || || ||| || |||||||| ||| Sbjct 2028 GACTCCGAGCGTCTGATCGGCGATGCCGCCAAGAACCAGGTCGCGATGAACCCCCACAAC 1969 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| ||||| ||||| || || || |||||||| ||| | ||||| | Sbjct 1968 ACCGTCTTCGACGCCAAGCGCCTGATCGGCCGCAAGTTCAAGGACTCCGAGGTCCAGAGC 1909 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || |||| | | ||| ||| | | | Sbjct 1908 GACATGAAGCACTGGCCCT-TCAAGGTGGTCCCCAAGGG--TGACCTCCCTGTTTTGCAG 1852 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || | || ||||| ||| || || | || || || || || |||||| | Sbjct 1851 GTGCAGTTCCACGGCGAGTCCAAGACCTTCACCCCTGAGGAGATCAGCTCGATGGTGCTC 1792 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | |||||||||||||| ||||| ||| | | || || || || | || || || Sbjct 1791 CTCAAGATGAAGGAGACCGCGGAGGCTTACCTCGGCAAGCAGGTCAAGAAGGCCGTCGTC 1732 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || || || || ||||| || ||||| || | | || Sbjct 1731 ACCGTGCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGCACGATC 1672 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| | || | || ||||| || || || || || || || || || || Sbjct 1671 GCTGGTCTCGAGGTGCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGC 1612 Query 195839 CTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 || |||||| | ||| | || || || || | ||||| ||||||||||| |||||| Sbjct 1611 CTCGACAAGGGTGACGACAAGGAGAAGAACGTGCTCATCTTCGATCTCGGTGGCGGTACG 1552 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 || ||||| | || |||| || || || || || ||||| || ||||| || || ||| Sbjct 1551 TTCGATGTGACCCTGCTCACGATCGACGGCGGCATCTTCGAGGTCAAGGCCACCGCGGGT 1492 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGAT--GCACGTCTTCTCCGTCATTTGTCTGATG 196016 ||||| || || |||||||| || |||||| | | || | | || || | |||| Sbjct 1491 GATACCCACCTCGGTGGTGAGGACTTCGATAACCGCCTCGTGAACTTC--TTCGCCGATG 1434 Query 196017 AGTTCCGTCGAAAGAATAAG---AAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGC 196073 ||||| || ||||| ||| || || | | || || | | || || || || | Sbjct 1433 AGTTCAAGCGCAAGAACAAGGGCAAGGACCTCGCCGGCAACCACCGCGCCCTCCGCCGCC 1374 Query 196074 TTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTG 196133 | | ||||| || || || ||||| || || ||||| || || | || | | | | | Sbjct 1373 TCCGCACTGCCTGCGAGCGCGCCAAGCGCACGCTCTCGTCCGCGACCCAGGCCACGATCG 1314 Query 196134 AGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTG 196193 |||| || | | || ||| || |||||| | | || || ||||| || || || | Sbjct 1313 AGATCGACGCCCTCTTCGACAACATCGACTTCCAGTCCACCATCACCCGCGCCCGCTTCG 1254 Query 196194 AAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTG 196253 | ||| | | ||| | || | | || | || || || | || || | Sbjct 1253 AGGAGCTGTGCGGTGACCTCTTCCGTAGCACCGTGCAGCCCGTCGAGCGCGTGCTCTCCG 1194 Query 196254 ACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTA 196313 | || |||||||| ||| || | || | || || ||||| || || ||||||| Sbjct 1193 ATGCCAAGATGGACAAGCGCGCCGTGCACGACGTAGTGCTGGTGGGCGGTTCCACCCGTA 1134 Query 196314 TTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGA 196373 | || ||| | || | | || || |||| || || | ||||| | | Sbjct 1133 TCCCCAAGGTGCAGAGCCTCGTCTCCGACTACTTCGGCGGCAAGGAGCTGAACAAGAGCA 1074 Query 196374 TCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTG 196433 ||||||| ||||| || || || || || ||||| || ||||| || || | || | Sbjct 1073 TCAACCCCGATGAGGCCGTCGCATACGGCGCGGCTGTGCAGGCGTTCATCCTGACCGGCG 1014 Query 196434 TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | | || | | | | ||| || || || ||||| | || | |||| ||| Sbjct 1013 GAAAGAGCAAGCAGACCGAGGGTCTGCTCCTGCTCGATGTGACCCCGCTCACCCTCGGTA 954 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 |||| || || || || || |||||| | || | | ||||| || || || || | Sbjct 953 TTGAGACCGCCGGCGGCGTCATGACTTCCCTCATCAAGCGCAACACGACCATCCCCACCA 894 Query 196554 AGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 ||||| || |||| || ||||| | || || || || || || || || || || | Sbjct 893 AGAAGAGCCAGATCTTCTCCACGTACGCGGACAACCAGCCCGGCGTGCACATCCAGGTCT 834 Query 196614 ATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 || || || ||| || | ||||| ||| || || || ||||| || | | Sbjct 833 TCGAGGGCGAGCGCGCCATGACCAAGGACTGCCACTCCCTCGGCACCTTCGACCTGTCCG 774 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 | ||||| | || ||| | ||||| || |||||| | || ||||||| | || || | Sbjct 773 GCATTCCCCCCGCGCCCCGCGGTGTGCCTCAGATTGAGGTCACCTTCGATCTCGATGCCA 714 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGG 196766 | || || || ||||| | || ||||| |||| Sbjct 713 ACGGTATCCTGAACGTGTCCGCGGAGGAGAAGG 681 >seq3958 Length=1797 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| |||||||| || || || ||| |||||||||| ||| || Sbjct 668 ATGCAAATCTTCGTGAAGACCCTTACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 609 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || || ||||| || || ||||| ||||| || || || ||| Sbjct 608 GACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 549 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || ||||| || |||||| Sbjct 548 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 489 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || ||||| || || | || || ||||| Sbjct 488 ATCCAGAAGGAGTCCACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 442 >seq1066 Length=6750 Score = 141 bits (156), Expect = 1e-28 Identities = 196/273 (72%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 441 GCTATTGGTATCGATCTGGGCACGACCTACTCCTGCGTGGGCGTGTGGCAGAACGAGCGT 382 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| || |||| ||||| || ||||| || || || || ||||| || || || Sbjct 381 GTGGAGATCATTGCGAACGACCAGGGTAACCGCACGACCCCCTCCTACGTCGCGTTCACC 322 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || ||||| | || |||||||| || || ||| || |||||||| ||| Sbjct 321 GACTCCGAGCGTCTGATCGGCGATGCCGCCAAGAACCAGGTCGCGATGAACCCCCACAAC 262 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| ||||| ||||| || || || |||||||| ||| | ||||| | Sbjct 261 ACCGTCTTCGACGCCAAGCGCCTGATCGGCCGCAAGTTCAAGGACTCCGAGGTCCAGAGC 202 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCC 195571 || || ||| ||||| | | | ||| || |||| Sbjct 201 GACATGAAGCACTGGCCCT-TCAAGGTGGTCCC 170 >seq611 Length=9752 Score = 98.7 bits (108), Expect = 1e-15 Identities = 220/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||| || ||| | | | || | | || || | || || ||||| Sbjct 1556 AAGATGAAGGAGATCGCAGAAACCTATCTCGGCGAGAAGGTAAAGAACGCCGTCGTGACG 1615 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || | || || ||| | || ||||| |||| | | ||||| Sbjct 1616 GTCCCGGCCTACTTCAACGACGCGCAGCGTCAGTCCACGAAGGATGCTGGTACGATTGCT 1675 Query 195782 GGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || ||| ||| | | || ||||| ||||| || || || || || || || || || Sbjct 1676 GGGCTTAAC-GTCGTCCGCATCATCAACGAACCGACTGCTGCCGCCATCGCGTACGGCCT 1734 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||||||| | || || || | | |||| |||||||| || |||||||| Sbjct 1735 ------CAACAAGGCGGGTGAGAAGAACATTCTCGTCTTCGATCTCGGCGGCGGTACGTT 1788 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||||| || || |||| || || | || | ||||| || ||| || || || Sbjct 1789 CGATGTGTCCCTCCTCACGATCGACGAAGGCTTCTTCGAGGTTGTGGCGACCAACGGCGA 1848 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGAT 195988 || ||||| ||||| || || |||||| Sbjct 1849 CACCCATCTCGGTGGCGAGGACTTCGAT 1876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657802534521600