Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq303 120 3e-22 seq3898 109 5e-19 seq207 109 5e-19 seq3874 107 2e-18 seq3040 95.1 1e-14 >seq303 Length=13852 Score = 120 bits (132), Expect = 3e-22 Identities = 455/704 (65%), Gaps = 15/704 (2%) Strand=Plus/Minus Query 139081 ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCA 139140 || ||||| | ||||||||||||| || |||||| | | || || | ||| || | Sbjct 11733 ATGGAGGCCAAGTTGCACACCGCCGTCTCCTCGGGGGAGGTATACTCAATAATCTCCGTG 11674 Query 139141 CACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCA 139200 |||| || |||||||| || || | ||| | || ||| || ||| || || Sbjct 11673 CACAGGTTGGAGCACTTGATGGTGCCGAGATTCTTCTGGTTGGACTTCTCGTTGCACGCG 11614 Query 139201 TCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAAC 139260 || ||||| | ||| |||| ||| || || | || | ||| | ||| |||| Sbjct 11613 TCCTTGTACAACATGAACGGCACGCCTGTCTCGATCTGGGACTCGAGGATGGC---GAAC 11557 Query 139261 AAG---TCCCTAGCTTGTATTTGACGCACGTAAA-GTTCGTCGCGCTCGTACTTTTCGTA 139316 || ||| || || || |||||| | | | |||| |||||| | ||||| Sbjct 11556 CAGAGCTCCTGCGCCTGGATGGTGCGCACGCCCATGCCCTTCGC-CTCGTAGTCCTCGTA 11498 Query 139317 GAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACAT 139376 ||| | ||||| || |||||| ||| || || | | ||| || ||| Sbjct 11497 GAGCTGCTCGAACTTCTCGCCGTAGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCAT 11438 Query 139377 GAGCGACCATACGCCGTTCGC-CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAG 139435 | || ||| ||| | ||| ||| |||||| ||||||||||||| || ||||| | | Sbjct 11437 CAACGTCCACTTGCCCT-CGCTCTTCACGCGCTTCATGAACAGATCGGGGATCCAGAGCG 11379 Query 139436 CGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGA 139495 || | | || |||||||| || || ||| || |||| || |||||| || | Sbjct 11378 CGTAGAACAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCATGAGCAGAA 11319 Query 139496 AATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT-- 139553 | || || | ||| |||||||| || || || || ||||| | || || || || || Sbjct 11318 ACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTACATGGCGAAGGCACCCTTGCGCTTAC 11259 Query 139554 -GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGAC 139612 ||| || ||||| |||| || | | |||||| | || || | ||||||| || | Sbjct 11258 CGCCGCCCTGATCCACGTAGCGGGCCGTATTATTCCACACACGGATCATCGGCATGAGGC 11199 Query 139613 CGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTG-TTGCGAGCTCGGACGTCATGTACA 139671 || | | || ||||| |||| |||| ||| ||| || |||| || || || Sbjct 11198 CGTTGGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCCGCG-GCACGGATGTTGTGCACG 11140 Query 139672 TTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTAT 139731 | |||||| || |||||| | ||| || | |||| || | || ||||| Sbjct 11139 TGGATGCCAATGCCGCCGGCGGCCTTGCTGATCACGGCGCACTCCTTGAGCGTGTCGTAG 11080 Query 139732 ATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 || || |||||||| |||| ||||| ||||| ||||| || Sbjct 11079 ATGCCCTCAATGCTGTCATCCTTCATCGCCACCAGGAAGCACGA 11036 >seq3898 Length=1846 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || |||||||||| || || | | Sbjct 240 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCGCTCGAAGTGGAGGCGAGC 181 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 180 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 121 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| ||||| | | | | || || ||| Sbjct 120 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACGCTTGCGGACTACAAC 61 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| | || ||||||| ||| Sbjct 60 ATCCAGAAGGAGTCGACGCTGCACCTTGTGCTCCGCCTGCGCGGCGGC 13 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || || | | Sbjct 1734 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 1675 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 1674 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1615 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| ||||| | | | | || || ||| Sbjct 1614 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACGCTTGCGGACTACAAC 1555 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| | ||| | || ||||||| || Sbjct 1554 ATCCAGAAGGAGTCGACGCTGCACCTTGTGCTCCGCCTGCGCGGTGG 1508 >seq207 Length=16371 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || || | | Sbjct 15920 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 15979 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 15980 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 16039 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| ||||| | | | | || || ||| Sbjct 16040 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACGCTTGCGGACTACAAC 16099 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 16100 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGGC 16147 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || || | | Sbjct 16148 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 16207 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 16208 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 16267 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| ||||| | | | | || || ||| Sbjct 16268 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACGCTTGCGGACTACAAC 16327 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGG 24927 || || ||||| ||||| || ||| ||||| | || ||||||| Sbjct 16328 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGG 16371 >seq3874 Length=1858 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || || | | Sbjct 1824 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 1765 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 1764 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1705 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| ||||| | | | | || || ||| Sbjct 1704 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACGCTTGCGGACTACAAC 1645 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| | || ||||||| || Sbjct 1644 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGG 1598 >seq3040 Length=2570 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || | ||||| || || || | | Sbjct 1154 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 1095 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1094 GACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1035 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| | | | | || || ||| Sbjct 1034 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 975 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||| || || || ||| | ||| | || ||||||| |||| | ||||| Sbjct 974 ATCCAGAAGGAGTCCACGCTCCACCTCGTGCTCCGCCTGCGCGGTGGCGTCATGGAGCCG 915 Query 24944 AC 24945 || Sbjct 914 AC 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449856659318400