Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq303 194 2e-44 seq3898 91.5 1e-13 >seq303 Length=13852 Score = 194 bits (214), Expect = 2e-44 Identities = 578/879 (66%), Gaps = 37/879 (4%) Strand=Plus/Minus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 147515 ||| ||||| || |||| ||||| || |||||||| |||| | | | |||| | || Sbjct 11740 CACCGCGATGGAGGCCAAGTTGCACACCGCCGTCTCCTCGGGGGAGGTATACTCAATAAT 11681 Query 147516 TTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT 147575 || | |||||||||| ||| || ||| || | ||| | ||| ||| ||| || Sbjct 11680 CTCCGTGCACAGGTTGGAGCACTTGATGGTGCCGAGATTCTTCTGGTTGGACTTCTCGTT 11621 Query 147576 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA-- 147633 ||||||||| ||| | | |||| |||| |||| ||||||| || | || | ||| Sbjct 11620 GCACGCGTCCTTGTACAACATGAACGGCACGCCTGTCTCGATCTGGGACTCGAGGATGGC 11561 Query 147634 -AACCTATGCAGGTCCTGCGCTCGCACC---CGCT-GCCGATAGCGGCCCTCGTTTTCGT 147688 |||| || |||||||| | | ||| ||| || ||||| |||| Sbjct 11560 GAACCAGAGC---TCCTGCGCCTGGATGGTGCGCACGCCCAT----GCCCTTCGCCTCGT 11508 Query 147689 ACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGA 147747 | |||||| | | |||| |||| ||||||||||| ||| |||||||| | || Sbjct 11507 AGTCCTCGTAGAGCTGCTCGAACTTCTCGCCGTAGCAGTCGCTGAGGCCGGGCGTCGTGT 11448 Query 147748 TGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGC 147807 || || | ||||| || |||| || | || || ||||| ||| |||||||| || Sbjct 11447 TGGGGTC-CATCAACGTCCACTTGCCCTCGCTCTTCACGCGCTTCATGAACAGATCGGGG 11389 Query 147808 ACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTC 147867 | ||| |||||||| | || |||||||| || || ||| ||||||| ||| Sbjct 11388 ATCCAGAGCGCGTAGAACAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTC 11329 Query 147868 AAATTAAGCA----CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGC 147923 | | |||| | | | ||||||| |||||||| || || | ||| | ||| | || Sbjct 11328 A---TGAGCAGAAACTCGA-AGATGTCCGCGTGCCACGGCTCGAGGTACATGGCGAAGGC 11273 Query 147924 ACCTTTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCAC 147980 ||| || ||||| ||||| ||| || || | ||| || | || || |||| || | Sbjct 11272 ACCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCCGTATTATTCCACACACGGAT 11213 Query 147981 CATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCG 148040 ||| || |||||| | | |||||||| ||| ||| | |||||| ||| || Sbjct 11212 CATCGGCATGAGGCCGTTGGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCCGCGGCACG 11153 Query 148041 CACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC 148100 | | |||||||| | ||||||||||||| || ||| || | ||||| || Sbjct 11152 GATGTTGTGCACGTGGATGCCAATGCCGCCGGCGGCCTTGCTGATCACGGCGCACTCCTT 11093 Query 148101 CAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAAC 148159 | || ||||||||| || |||||||| | || | |||| | || || ||||| | Sbjct 11092 GAGCGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATCGCC-ACCAGGAAGCACGAGC 11034 Query 148160 ACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATT 148219 ||| || || | | || || || ||| |||||||| |||| || || || || Sbjct 11033 TCATCTGGGGCTTGGGGGTGCCGGCGTTGAAGAGGGTGGGTGTCGCATGGGTGAAGAAGC 10974 Query 148220 TTTGACTCATCATG----CGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATG 148275 || ||| | | | | || | || || |||| ||| | |||||| ||| Sbjct 10973 CCTGGGACATGAGGGTGTAGGTGCGGCGCA----CGCGGTCGAGGTCCTTGCCGTGGATG 10918 Query 148276 CCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCG 148314 || | ||| || |||| | ||||||||| || || ||| Sbjct 10917 CCAATCGCCACACGCAGAATCATGTGCTGCGGGCGCTCG 10879 >seq3898 Length=1846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988 ||||| || || ||||||||||| | || | || || || |||||||| || || | Sbjct 47 GACTCCTTCTGGATGTTGTAGTC-CGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGC 105 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| || ||||| || || ||||| ||||| || || || || || |||| Sbjct 106 AAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC 165 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | || ||| ||| ||||||||||| || | ||| || || |||||||| || Sbjct 166 GTTCTCGATCGTGTCGCTCGCCTCCACTTCGAGCGCGATCGTCTTGCCGGTCAGAGTCTT 225 Query 132109 TATGAAAATCTGCATGA 132125 | ||| |||||||||| Sbjct 226 CACGAAGATCTGCATGA 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476567828380800