Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5767 113 5e-20 seq3898 113 5e-20 seq3519 109 6e-19 seq2484 109 6e-19 seq3958 107 2e-18 seq3874 100 3e-16 seq303 100 3e-16 seq207 100 3e-16 seq3040 96.9 4e-15 >seq5767 Length=966 Score = 113 bits (124), Expect = 5e-20 Identities = 217/318 (68%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 21544 CGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCG 21603 || || || ||||| || ||||| || | |||| |||| |||||||| | || Sbjct 152 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCGC 211 Query 21604 ACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGCG 21663 || || ||||| ||| || |||||||||||||| | || || || |||| |||||| Sbjct 212 ACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCG 271 Query 21664 TGTATTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGACAA 21723 | | || || || |||| ||| ||||| |||||||| || || Sbjct 272 AGCACGCGCTCGCGGGGCAGCTTGT------GCTTGATGTGGCTGTTGTAGAGCAGGCAG 325 Query 21724 GCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCG 21783 || || | |||||||| |||||||||||||| || | ||||||||||| ||||| ||| Sbjct 326 GCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCG 385 Query 21784 GGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCA-AAGCTACCGGaaaaaaaCAC 21842 ||||| | || || || || | | | || || ||| ||| ||||| || || | Sbjct 386 GGCATCACGCCGCGCTTCTTGA-GCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGAT 444 Query 21843 GCCCTCCACAATGGCGAA 21860 |||||| || |||||| Sbjct 445 GCCCTCGACGGCGGCGAA 462 >seq3898 Length=1846 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 23 AGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 82 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| |||||||| || || || ||||| || Sbjct 83 CCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 142 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| ||||| | Sbjct 143 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACTTCGAGCGCG 202 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTT 134722 || || || ||||| | ||| || ||||| || ||||| || |||| Sbjct 203 ATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATGATTTT 249 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 1517 AGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 1576 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| |||||||| || || || ||||| || Sbjct 1577 CCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 1636 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 1637 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCG 1696 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 1697 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1734 >seq3519 Length=2121 Score = 109 bits (120), Expect = 6e-19 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 21544 CGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCG 21603 || || || ||||| || ||||| || | |||| |||| |||||||| | || Sbjct 1835 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCGC 1894 Query 21604 ACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGCG 21663 || || ||||| ||| || |||||||||||||| | || || || |||| |||||| Sbjct 1895 ACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCG 1954 Query 21664 TGTATTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGACAA 21723 | | || || || |||| ||| ||||| |||||||| || || Sbjct 1955 AGCACGCGCTCGCGGGGCAGCTTGT------GCTTGATGTGGCTGTTGTAGAGCAGGCAG 2008 Query 21724 GCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCG 21783 || || | |||||||| |||||||||||||| || | ||||||||||| ||||| ||| Sbjct 2009 GCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCG 2068 Query 21784 GGCAT 21788 ||||| Sbjct 2069 GGCAT 2073 >seq2484 Length=3244 Score = 109 bits (120), Expect = 6e-19 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 21544 CGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCG 21603 || || || ||||| || ||||| || | |||| |||| |||||||| | || Sbjct 264 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCGC 205 Query 21604 ACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGCG 21663 || || ||||| ||| || |||||||||||||| | || || || |||| |||||| Sbjct 204 ACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCG 145 Query 21664 TGTATTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGACAA 21723 | | || || || |||| ||| ||||| |||||||| || || Sbjct 144 AGCACGCGCTCGCGGGGCAGCTTGT------GCTTGATGTGGCTGTTGTAGAGCAGGCAG 91 Query 21724 GCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCG 21783 || || | |||||||| |||||||||||||| || | ||||||||||| ||||| ||| Sbjct 90 GCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGCCCG 31 Query 21784 GGCAT 21788 ||||| Sbjct 30 GGCAT 26 >seq3958 Length=1797 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| |||||||| ||||| || ||||||||||| | | ||| | Sbjct 451 AGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 510 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || || | |||||||| || ||||| ||||| || Sbjct 511 CCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 570 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || || || ||||| | Sbjct 571 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCG 630 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| | || || ||||| |||||||| ||| Sbjct 631 ATCGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCATGTTG 672 >seq3874 Length=1858 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 1607 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 1666 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| |||||||| || || || ||||| || Sbjct 1667 CCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 1726 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 1727 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCG 1786 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 1787 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1824 >seq303 Length=13852 Score = 100 bits (110), Expect = 3e-16 Identities = 280/424 (66%), Gaps = 13/424 (3%) Strand=Plus/Plus Query 7669 CCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACC 7728 |||||| | || ||| ||||| | ||| || || |||||| || || | | Sbjct 10994 CCCACCCTCTTCAACGCCGGCACCCCCAAGCCCCAGATGAGCTCGTGCTTCCTGGTGGCG 11053 Query 7729 ATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCC 7788 ||| || |||||||| || ||||| ||| ||||||| || |||||| || | Sbjct 11054 ATGAAGGATGACAGCATTGAGGGCATCTACGACACGCTCAAGGAGTGCGCCGTGATCAGC 11113 Query 7789 AAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATC 7848 || || |||||| || || | |||| || || | || ||| || ||| |||| Sbjct 11114 AAGGCCGCCGGCGGCATTGGCATCCACGTGCACAACATCCGTGCCGCGGGCAGCTACATC 11173 Query 7849 GTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCG 7908 | ||| ||||| | ||| ||| | ||| ||| | || |||| ||||| || Sbjct 11174 GCCGGCACGAACGGCACGTCCAACGGCCTCATGCCGATGATCCGTGTGTGGAATAATACG 11233 Query 7909 GTGCGACATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAG 7965 | || | || || ||||| || |||||||| || ||| ||||| || | ||| Sbjct 11234 GCCCGCTACGTGGATCAGGGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATGTACCTCGAG 11293 Query 7966 CCGTGGCACGCGGACATTTACGCAG----TGCTAAATCTGCGTCGCAACATGGGTTGCGA 8021 ||||||||||||||||| | || || |||| | || ||||||| || || Sbjct 11294 CCGTGGCACGCGGACATCTTCG-AGTTTCTGCTCA---TGAAGCGCAACACCGGCAAGGA 11349 Query 8022 AGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGC 8080 || |||| |||||||| || |||| || | ||| | ||||||||||| |||| || Sbjct 11350 CGACCAGC-GTGCGCGCGACCTGTTCTACGCGCTCTGGATCCCCGATCTGTTCATGAAGC 11408 Query 8081 GCGT 8084 |||| Sbjct 11409 GCGT 11412 >seq207 Length=16371 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 16137 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 16078 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| |||||||| || || || ||||| || Sbjct 16077 CCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 16018 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 16017 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCG 15958 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 15957 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 15920 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 16365 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 16306 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| |||||||| || || || ||||| || Sbjct 16305 CCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 16246 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 16245 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCG 16186 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 16185 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 16148 >seq3040 Length=2570 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| |||||||| ||||| || ||||||||||| | | ||| | Sbjct 937 AGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 996 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || || | |||||||| || || || ||||| || Sbjct 997 CCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 1056 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || || || ||||| | Sbjct 1057 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCG 1116 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 1117 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505352408745600