Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3519 114 4e-20 seq5767 111 5e-19 seq303 107 6e-18 seq2484 104 7e-17 >seq3519 Length=2121 Score = 114 bits (126), Expect = 4e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| | || |||||||| | |||| ||| || ||||| || ||||| || Sbjct 2104 CTCCATCTTCTGGCTCAAGAAGCGTGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCT 2045 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 ||| || |||||||| |||| |||||||||||| || ||||||| || ||||| Sbjct 2044 CATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACAT 1985 Query 443883 CGTGCACAAGCTGCCC 443898 | ||||||||||||| Sbjct 1984 CAAGCACAAGCTGCCC 1969 >seq5767 Length=966 Score = 111 bits (122), Expect = 5e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| | || ||||| || | |||| ||| || ||||| || ||||| || Sbjct 421 CTCCATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCT 362 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 ||| || |||||||| |||| |||||||||||| || ||||||| || ||||| Sbjct 361 CATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACAT 302 Query 443883 CGTGCACAAGCTGCCC 443898 | ||||||||||||| Sbjct 301 CAAGCACAAGCTGCCC 286 >seq303 Length=13852 Score = 107 bits (118), Expect = 6e-18 Identities = 487/763 (64%), Gaps = 12/763 (2%) Strand=Plus/Plus Query 254755 CACGCATGCGACCCCGACTCTCTTCACGGCCGGT---CTGAAGCGCCAAACCTTGGCCAG 254811 ||| |||||||| || || ||||||| ||||| | |||| ||| | || | Sbjct 10981 CACCCATGCGACACCCACCCTCTTCAACGCCGGCACCCCCAAGCCCCAGA---TGAGCTC 11037 Query 254812 CTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCG 254871 |||| ||| || | || | || ||||| || | ||||||| ||| ||||| | Sbjct 11038 GTGCTTCCTGGTGGCGATGAAGGATGACAGCATTGAGGGCATCTACGACACGCTCAAGGA 11097 Query 254872 ATGCGCATTCGTGAGTCAATCGAGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGC 254931 ||||| | | || | | ||||||| | || || || | |||| | || || Sbjct 11098 GTGCGCCGTGATCAGCAAGGCCGCCGGCGGCATTGGCATCCACGTGCACAACATCCGTGC 11157 Query 254932 CAGCGGCACACCGAT-TCGCTCG-ACGAACGGACGGAGCGGCGGCATTATACCAATGATC 254989 | |||| || | | |||| | |||||||| | | |||| | || || |||||| Sbjct 11158 C-GCGGG-CAGCTACATCGCCGGCACGAACGGCACGTCCAACGGCCTCATGCCGATGATC 11215 Query 254990 CGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCG 255049 ||||||| || || ||| |||||||| ||||| || ||||| || ||| || || Sbjct 11216 CGTGTGTGGAATAATACGGCCCGCTACGTGGATCAGGGCGGCGGTAAGCGCAAGGGTGCC 11275 Query 255050 TTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGAC 255109 ||| |||| ||||| |||||||||||||| ||||| |||| | || || | Sbjct 11276 TTCGCCATGTACCTCGAGCCGTGGCACGCGGACATCTTCGAGTTTCTGCTCATGAAGCGC 11335 Query 255110 AAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGAT 255169 || ||||||| || || | | || |||||| | | | ||| ||||| | |||| Sbjct 11336 AACACCGGCAAGGACGACCAGCGTGCGCGCGACCTGTTCTACGCGCTCTGGATCCCCGAT 11395 Query 255170 CTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCCAACTTATCG 255229 ||||| ||| |||||| | | || | | |||| | ||| |||||| || Sbjct 11396 CTGTTCATGAAGCGCGTGAAGAGCGAGGGCAAGTGGACGTTGATGGACCCCAACACGACG 11455 Query 255230 CCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGGAGTACGAGCGT 255289 ||||| || ||||| | || || |||| || | || || ||| |||||| Sbjct 11456 CCCGGCCTCAGCGACTGCTACGGCGAGAAGTTCGAGCAGCTCTACGAGGACTACGAGGCG 11515 Query 255290 GCCGGCCGGTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAACACGATGGTGCGCAT- 255348 ||| | ||| ||| | | ||| || || ||||| | | || | || | Sbjct 11516 AAGGGCATGGGCGTGCGCACCATCCAGGCGCAGGAGCTCTGGTTCGCCATCCT-CGAGTC 11574 Query 255349 GCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGACCACATAAACGCACGGTCGAA 255408 ||| | || || || |||||||| | ||| |||| ||| |||| ||| || Sbjct 11575 CCAGATCGAGACAGGCGTGCCGTTCATGTTGTACAAGGACGCGTGCAACGAGAAGTCCAA 11634 Query 255409 CCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCACCGAGATTACGTTGCACAC 255468 ||| | | ||| || || |||| ||||||||||| ||||||| | | || Sbjct 11635 CCAGAAGAATCTCGGCACCATCAAGTGCTCCAACCTGTGCACGGAGATTATTGAGTATAC 11694 Query 255469 GTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCCATCTCG 255511 || | | ||| ||| || ||||||||||| |||||| || Sbjct 11695 CTCCCCCGAGGAGACGGCGGTGTGCAACTTGGCCTCCATCGCG 11737 Score = 87.8 bits (96), Expect = 6e-12 Identities = 204/305 (67%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 256128 TCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCG 256187 ||| |||| ||| |||||||||||| | | ||||| ||||| |||||| || Sbjct 12156 TCGTGGAGGTCGGCATGCGCAACTCGCTGCTGCTCGCGCCGATGCCCACCGCCTCGACGT 12215 Query 256188 CTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCC 256247 | || || || || ||| || || |||| ||| | || ||||| ||| | ||||| Sbjct 12216 CGCAGATTCTTGGGAACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTGCGCC 12275 Query 256248 GCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGAC 256307 | || | |||||||||| |||| || ||| ||||| | ||| ||| | | | Sbjct 12276 GTGTGCTAAGCGGCGAGTTCCCCGTCGTCAACAAGTACCTCGTGATGGACCTCATCAAGC 12335 Query 256308 TCGGTCTGTGGAACGAGAAGATGCAACAACG-CATAATTCGGGCCCGTGGGTCGGTGCAG 256366 |||||| |||| ||| ||||| | ||||| || || | ||||| |||||| Sbjct 12336 GCGGTCTCTGGAGCGACAAGAT-CCGCAACGAGATCATCACCTTCAACGGGTCCGTGCAG 12394 Query 256367 AACATTGAGCGCTTGCCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCG 256426 ||| | | | | ||| | |||||||| | |||||||| || |||||||| || Sbjct 12395 AACGTGATGGACATCCCGGAGGACCTGCGCGAGCTGTACCGCACCGTGTGGGAGATCTCG 12454 Query 256427 CAACG 256431 || || Sbjct 12455 CAGCG 12459 >seq2484 Length=3244 Score = 104 bits (114), Expect = 7e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 ||||||| | || |||||||| | |||| ||| || ||||| || ||||| || ||| Sbjct 1 CTTCTGGCTCAAGAAGCGTGGCGTGATGCCCGGGCTCACCTTCAGCAACGAGCTCATCTC 60 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCA 443888 || |||||||| |||| |||||||||||| || ||||||| || |||||| ||| Sbjct 61 GCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATCAAGCA 120 Query 443889 CAAGCTGCCC 443898 |||||||||| Sbjct 121 CAAGCTGCCC 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588187847959600