Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq303 241 1e-58 seq1542 116 4e-21 >seq303 Length=13852 Score = 241 bits (266), Expect = 1e-58 Identities = 478/692 (69%), Gaps = 22/692 (3%) Strand=Plus/Plus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| || || || || || ||||| |||||||| || || | || |||||| || Sbjct 10978 CTTCACCCATGCGACACCCACCCTCTTCAACGCCGGCACCCCCAAGCCCCAGATG---AG 11034 Query 53332 CT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAA 53388 || |||||||||||||||||||||||||| || || ||||||||||| |||||||| Sbjct 11035 CTCGTGCTTCCTGGTGGCGATGAAGGATGACAGCATTGAGGGCATCTACGACACGCTCAA 11094 Query 53389 GGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCC 53447 |||||| ||| ||| |||| | || || || || |||||| ||| | ||| ||| Sbjct 11095 GGAGTGCGCCGTGATCAGCAAGGCCGCCGGCGGCATTGGCATCCACGTGCAC-AACATCC 11153 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 |||| |||| ||| || ||||||||| || | || || |||| ||| Sbjct 11154 GTGCCGCGGGCAGCTACATCGCCGGCACGAACGGCACGTCCAACGGCCTCATGCCGATGA 11213 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 |||| || | || || |||||||| ||||| | ||||| || || ||||||||||| Sbjct 11214 TCCGTGTGTGGAATAATACGGCCCGCTACGTGGATCAGGGCGGCGGTAAGCGCAAGGGTG 11273 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | |||||||| |||||||||||||||||||| ||||| | |||||||| || | Sbjct 11274 CCTTCGCCATGTACCTCGAGCCGTGGCACGCGGACATCTTCGAGTTTCTGCTCATGAAGC 11333 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCC 53685 || || | || || ||| ||| || |||||||| ||| || || ||||| || Sbjct 11334 GCAACACCGGCAAGGACGACCAGCG-TGCGCGCGACCTGTTCTAC-GCGCTCTGGATCCC 11391 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG---AGTGGTACCTGATGTGCCCGAA 53742 || || |||||| ||| | |||| ||||| ||||| ||||| ||| || Sbjct 11392 CGATCTGTTCATG---AAGCGCGTGAAGAGCGAGGGCAAGTGGACGTTGATGGACCCCAA 11448 Query 53743 CGAGTGCCCCGGCCTCCAGGGTGT-CTACGGTGAGGAGTTTAACGAGATGTA-TCGGACG 53800 | | |||||||| ||| | | |||||| ||| |||| | || | || |||| Sbjct 11449 CACGACGCCCGGCCT-CAGCGACTGCTACGGCGAGAAGTTCGAGCAGCTCTACGAGGAC- 11506 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 |||| | ||||| | | | || |||||| ||| | ||| || ||| Sbjct 11507 TACGAGGCGAAGGGCATGGGCGTGCGCACCATCCAGGCGCAGGAGCTCTGGTTCGCCATC 11566 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 ||| || |||| | ||||| || ||||| ||||| |||||||| || ||||||| Sbjct 11567 CTCGAGTCCCAGATCGAGACAGGCGTGCCGTTCATGTTGTACAAGGACGCGTGCAACGAG 11626 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 ||| |||||||||||| ||||| |||||| Sbjct 11627 AAGTCCAACCAGAAGAATCTCGGCACCATCAA 11658 Score = 159 bits (176), Expect = 4e-34 Identities = 533/815 (65%), Gaps = 31/815 (4%) Strand=Plus/Plus Query 55139 AACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAAC 55198 ||||||||||| ||||| ||| ||| |||||||| || |||||||| |||| Sbjct 11816 AACCTGAACCGTGTCATAGACCGGAACTACTACCCCGTCGAGACGGCGCGCCGCAGCAAC 11875 Query 55199 CTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTC 55258 | || |||| ||| ||| | | || || |||||| | |||||| |||| ||||| Sbjct 11876 ATGCGCAACCGCCCCGTCGGCCTTGGCGTGCAGGGCCTCGCCGACGCCTTCTGCCTGCTC 11935 Query 55259 GGATTGCCCTTC--GA-CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCG 55314 | |||||||| || | |||| | || | ||| ||||||||||| || | Sbjct 11936 CGCCTGCCCTTCACGAGCCCGGAGGCGCAGCGTC---TCAACGAGGACATCTTCGAGAC- 11991 Query 55315 CATCTACTTTGCAGCGCTCGAGGAGTCGT--GTC-ATCTGGCTATGAGCGAGGGGACCTA 55371 |||||||| || || || |||||||| || | |||||| |||||| |||| Sbjct 11992 CATCTACTACGCTGC---CGTGGAGTCGTCCGTGGACCTGGCTGCCGTCGAGGGCCCCTA 12048 Query 55372 CGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAA 55431 |||||| ||| | || || |||| | || |||||||| || ||| | | Sbjct 12049 CGAGACCTTCAAGGGCAGCCCCGCCTCGGAGGGTATGCTGCAGTTCGACCTGTGGCACGA 12108 Query 55432 GTCT-----GACCCCATGTTTGACAAGTTGAAGCA-TGACATT-CACTT-GTGG-----G 55478 | | || | | | || | || || ||| | | | | |||| | Sbjct 12109 GACGCCGAAGAGCGGCCGCTGGAACTGG-GACGCGCTGAAAAAGCGCGTCGTGGAGGTCG 12167 Query 55479 GCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGG 55538 || | |||||||| ||||| | ||||| ||||| ||||| |||||| | ||||| | | Sbjct 12168 GCATGCGCAACTCGCTGCTGCTCGCGCCGATGCCCACCGCCTCGACGTCGCAGATTCTTG 12227 Query 55539 GCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAG 55598 | ||||||||| |||||||| | ||| ||||||||||| ||||||| ||| | Sbjct 12228 GGAACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTGCGCCGTGTGCTAAGCG 12287 Query 55599 GTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGA 55658 | ||||| | | |||||||| ||||||| | |||||| ||| | |||| Sbjct 12288 GCGAGTTCCCCGTCGTCAACAAGTACCTCGTGATGGACCTCATCAAGCGCGGTCTCTGGA 12347 Query 55659 ACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGA 55715 | ||||| | || || | | |||||||| ||||| |||| | Sbjct 12348 GCGACAAGATCCGCAACGAGATCATCACCTTCAACGGGTCCGTGCAGAACGTGATGGACA 12407 Query 55716 TTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 | || | || ||| | ||||| || ||||||||||| | ||| | || | Sbjct 12408 TCCCGGAGGACCTGCGCGAGCTGTACCGCACCGTGTGGGAGATCTCGCAGCGCACCCTCA 12467 Query 55776 TTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA 55835 | |||||| || | || || |||||| |||||||| ||||| ||||| ||||| Sbjct 12468 TCGACATGGCGGCCGCCCGCGGCAAGTACATTGACCAGTCGCAGTCGATGAACCTCTTCC 12527 Query 55836 TGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGAC 55895 |||||| ||||| || | || | | || |||||||| || | |||||| ||| | Sbjct 12528 TGGAGAGCCCTTCGTCGGGCCAGATCACGTCCATGCACTTCCACTGCTGGAAGTCGGGTC 12587 Query 55896 TCAAGACGGGTATGTACTATCTGCGGACCCGCGCC 55930 |||||||||| |||||||| || || || ||| || Sbjct 12588 TCAAGACGGGCATGTACTACCTCCGCACTCGCCCC 12622 >seq1542 Length=5095 Score = 116 bits (128), Expect = 4e-21 Identities = 320/482 (66%), Gaps = 19/482 (4%) Strand=Plus/Plus Query 124563 AGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTT 124622 ||||||||| | | ||||||||||| ||||| |||||||||||| ||| | | ||| Sbjct 952 AGCCACATGCCGTAGACGTAGTCCTTGGCGTGGCCCCAGTCGCGCAGGGCGTTGACGTTA 1011 Query 124623 CCGAGCTCGA------TTGGCTTGGCCGTCTT-GTTCCACTCCGCCAAACCCAGTGTAAT 124675 ||||| ||| | ||||| |||| || | | | | | ||| | | | | Sbjct 1012 CCGAGGGCGAGGTCTTTCTGCTTG-CCGTATTTGATGCGCACGGCCGCGCGGACGATCTT 1070 Query 124676 CTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGT 124735 |||| || || || || ||| || ||| |||||||||||||| || ||||| || Sbjct 1071 CTTG---GTGACGAAGGTGGCACCACGGCGCGGGGACTCGTGGTTGAAGAGGATGCC-GT 1126 Query 124736 ACAC-GCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCT 124794 | | || ||||| ||||||| |||||||||||| || ||||| || || | |||| Sbjct 1127 TCGCGGCGAACATGCCGTACGCCTCGCGGTAGTTCACGGTGATCCAGTAGCCGTACAGCT 1186 Query 124795 TGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCT 124854 ||| || | || ||||| ||||||||||| || || | || |||| | || Sbjct 1187 TGGCGACCGCGTACGGGCTACGGGGGTAGAAGGGCGTCGTCTCGGACTGGGGCACCTCCT 1246 Query 124855 GAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAA--TTTTGAAATAGA 124912 | | || ||| ||| || ||||| ||||| ||| | | || | | Sbjct 1247 GCACGAGGCCGTACAGCTCGCTGGTGGAGGCCTGGTAGAACTTGCACGTCTT---CTCCA 1303 Query 124913 ATTCGTTTGA-CGAATTGCCTCCAAGATCCGAAGGGTTCCCATGGCGTCCACATTGGCGG 124971 || | || ||||| || || | | | || || || ||| ||||| | | | ||| Sbjct 1304 GCCCGCTGGAGCGAATCGCGTCGAGCAGCTTGAGCGTGCCGATGCCGTCCGCCTGGCCGG 1363 Query 124972 TATACTCGGGCTGATCAAAAGACAGTTTCACATGGGACTGGGCACCTAGGTTGTACACCT 125031 | ||||| || || || |||| ||||| |||||||| ||| | ||||||||||||| Sbjct 1364 TGTACTCAGGGGTCTCGAAGGACACCTTCACGTGGGACTGCGCAGCCAGGTTGTACACCT 1423 Query 125032 CG 125033 || Sbjct 1424 CG 1425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547166203344000