Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2024 176 4e-39 >seq2024 Length=3994 Score = 176 bits (194), Expect = 4e-39 Identities = 405/607 (67%), Gaps = 10/607 (2%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| || ||||| ||||||| | | |||||||||||| || ||||| |||| Sbjct 2293 AGCTGCTCCTGCAGCGCCTCCACGTGGTTCTTGTAGACGTGAGCATCCCCCAGCGTGTGC 2352 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 || | ||| ||||| | ||||||||| | | || |||| ||||||| | ||| Sbjct 2353 ACGAGCTCGCCCGGCTTGAGCCCGGTGGCCTTGGCGATCAAAATGGTGAGGAAGGCGTAC 2412 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||||||||||||| || ||||||||||| || | | |||||| ||| || Sbjct 2413 GAGGCGATGTTAAAGGGCACACCGAGCCCCATATCGCAACTGCGCTGGTATAGCATGCAG 2472 Query 30044 GAGAGCTC-TCCGTC-----GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGA 30097 ||||| | ||| | ||||||| ||||| | | | ||||||||| || || Sbjct 2473 CTCAGCTCCTGCGTGTTCGTGTTCACGTAGAACTGCCCGAGGAGGTGGCACGGCGGGAGG 2532 Query 30098 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 30157 ||||| | ||| | ||||||||| ||| | || | || | ||| | ||| Sbjct 2533 GCCATCTTGTCCAGCGCGGCGGGGTTCCACGCGGTGAAGAGCAGCCGGCGGTCGTTCGGG 2592 Query 30158 TTGTTCCTGATGAGGTCCACG--GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30215 || || ||| || ||| ||| || | |||||| || ||| | || ||||| Sbjct 2593 TTCGTCTTGAGCGTCTCGACGATGCGCTTG--ATCTGATCGACGCCCTTGCCGTCGTAGT 2650 Query 30216 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30275 | | | |||||||| || ||||| || | ||||||||| ||||||||||| | Sbjct 2651 TCTCGTGGAAGGAGGTGTACTCGGCCCCGAAGTGGCGCCACTGGAAGCCGTACACCGGCC 2710 Query 30276 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30335 | ||||| ||| || |||| || ||| | |||| | ||| | | | |||| Sbjct 2711 CGAGGTCCATCTCCTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCCGT 2770 Query 30336 TGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 || |||||||||| | || ||||| || | |||| |||| ||| || || || | Sbjct 2771 TGTCGTCCCAGATGTGGACGCCCTTGTCGGCGAGCAGCTTGGCGTTGGTCTCGCCCCTCA 2830 Query 30396 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGG 30455 |||||| | |||||||| |||| | ||| ||||| | ||| |||||||| || | Sbjct 2831 GGAACCAAATGAGCTCCTCGGAGACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGCAGCG 2890 Query 30456 GAAACTG 30462 | | ||| Sbjct 2891 GCAGCTG 2897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406274350109760