Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq207 100 2e-16 seq3958 93.3 3e-14 seq3898 93.3 3e-14 seq3040 93.3 3e-14 seq3874 91.5 9e-14 >seq207 Length=16371 Score = 100 bits (110), Expect = 2e-16 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || || || |||||| || ||||| || || | Sbjct 16147 GCCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 16088 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || || || || ||||| || | ||||| |||||||| || Sbjct 16087 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 16028 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| |||| |||| Sbjct 16027 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCC 15970 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || |||| | ||||| || ||||| | ||| ||||| || ||||||||| |||| Sbjct 15969 ACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGATGAT 15914 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || || |||||| || ||||| || || | ||| || || Sbjct 16365 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 16306 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||| |||||||| || | |||||| Sbjct 16305 CCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 16246 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | || ||||| |||| |||||| |||| | Sbjct 16245 TTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCCACCTCCAGCG 16188 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 16187 CGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 16147 >seq3958 Length=1797 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||| | ||||| ||| |||||| || ||||| || || | Sbjct 440 CGCCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 499 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | || || || || || ||||| || || | ||||| |||||||||| Sbjct 500 CGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 559 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | ||||||||||| |||| || | || ||| | || ||||| |||| ||| Sbjct 560 GGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATGGTGTCGCTCGC-CTC 617 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || || | || ||||| || ||||| | || ||||| || || ||||||||||| Sbjct 618 GACCTCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCATGTTGAT 674 >seq3898 Length=1846 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||| | || || || |||||| || ||||| || || | Sbjct 13 GCCGCCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 72 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || || || || ||||| || | ||||| |||||||| || Sbjct 73 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 132 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| |||| |||| Sbjct 133 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCC 190 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 ||||| | | ||||| || ||||| | || ||||| || ||||||||| ||||| Sbjct 191 ACTTCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATGATT 247 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | ||| || || | || || || || || || ||||| Sbjct 1543 CTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAA 1602 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||||| |||||||| || | ||||||||||| |||| || | || ||| Sbjct 1603 GATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGT 1661 Query 34635 T-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 | || ||||| |||| |||||| |||| | ||||| || ||||| | ||| ||| Sbjct 1662 TCTCGATCGTGTCGCTCGC-CTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTC 1720 Query 34693 ACAAAAATCTGCATG 34707 || || ||||||||| Sbjct 1721 ACGAAGATCTGCATG 1735 >seq3040 Length=2570 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||| | ||||| ||| |||||| || ||||| || || | Sbjct 926 CGCCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 985 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | || || || || || ||||| || || | ||||| |||||||| | Sbjct 986 CGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGG 1045 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | ||||||||||| |||| || | || ||| | || ||||| |||| ||| Sbjct 1046 GGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATGGTGTCGCTCGC-CTC 1103 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || || | || ||||| || ||||| | ||| ||||| || ||||||||| |||| Sbjct 1104 GACCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGCTGAT 1160 >seq3874 Length=1858 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || || |||||| || ||||| || || | ||| || || Sbjct 1607 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 1666 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||| |||||||| || | |||||| Sbjct 1667 CCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 1726 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | || ||||| |||| |||||| |||| | Sbjct 1727 TTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCCACCTCCAGCG 1784 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 1785 CGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314701675616240