Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2024 176 3e-39 >seq2024 Length=3994 Score = 176 bits (194), Expect = 3e-39 Identities = 405/607 (67%), Gaps = 10/607 (2%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| || ||||| |||||||| | | |||||||||||| || ||||| ||||| Sbjct 2293 AGCTGCTCCTGCAGCGCCTCCACGTGGTTCTTGTAGACGTGAGCATCCCCCAGCGTGTGC 2352 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 || | ||| ||||| | ||||||||| | | || |||| ||||||| | ||| Sbjct 2353 ACGAGCTCGCCCGGCTTGAGCCCGGTGGCCTTGGCGATCAAAATGGTGAGGAAGGCGTAC 2412 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||||||| || ||||||||||| || | | |||||| ||| || Sbjct 2413 GAGGCGATGTTAAAGGGCACACCGAGCCCCATATCGCAACTGCGCTGGTATAGCATGCAG 2472 Query 27310 GAGAGCTC-TCCATC-----GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGA 27363 ||||| | | | | | ||||| ||||| | | | ||||||||| || || Sbjct 2473 CTCAGCTCCTGCGTGTTCGTGTTCACGTAGAACTGCCCGAGGAGGTGGCACGGCGGGAGG 2532 Query 27364 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 27423 ||||| | ||| | ||||||||| ||| | || | || | ||| | ||| Sbjct 2533 GCCATCTTGTCCAGCGCGGCGGGGTTCCACGCGGTGAAGAGCAGCCGGCGGTCGTTCGGG 2592 Query 27424 TTGTTCCTGATGAGGTCCACG--GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 27481 || || ||| || ||| ||| || | |||||| || ||| | || ||||| Sbjct 2593 TTCGTCTTGAGCGTCTCGACGATGCGCTTG--ATCTGATCGACGCCCTTGCCGTCGTAGT 2650 Query 27482 CTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTC 27541 | | | |||||||| || ||||| || | ||| ||||| ||||||||||| | Sbjct 2651 TCTCGTGGAAGGAGGTGTACTCGGCCCCGAAGTGGCGCCACTGGAAGCCGTACACCGGCC 2710 Query 27542 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 27601 | ||||| ||| || |||| || ||| | |||| | ||| | | | |||| Sbjct 2711 CGAGGTCCATCTCCTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCCGT 2770 Query 27602 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 27661 || |||||||||| | || ||||| |||| |||| |||| ||| || || || | Sbjct 2771 TGTCGTCCCAGATGTGGACGCCCTTGTCGGCGAGCAGCTTGGCGTTGGTCTCGCCCCTCA 2830 Query 27662 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGG 27721 |||||| | |||||||| |||| | ||| ||||| | ||| |||||||| || | Sbjct 2831 GGAACCAAATGAGCTCCTCGGAGACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGCAGCG 2890 Query 27722 GAAACTG 27728 | | ||| Sbjct 2891 GCAGCTG 2897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369474415473680