Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3898 179 8e-40 seq3874 178 3e-39 seq3040 176 9e-39 seq3958 174 3e-38 seq207 172 1e-37 seq5767 123 5e-23 seq3519 123 5e-23 seq2484 123 5e-23 seq84 96.9 7e-15 >seq3898 Length=1846 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || || || || | ||| || || |||||||||||||| ||| Sbjct 14 CCGCCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 73 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||||| || || ||||| || Sbjct 74 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 133 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || ||| Sbjct 134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACT 193 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||| || |||| |||||| ||||| |||||||| Sbjct 194 TCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 240 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 1507 ACCACCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1566 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||| ||||| || || || || |||||||||| || || ||||| || Sbjct 1567 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 1626 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 1627 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 1686 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 1687 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1734 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| ||| Sbjct 1736 CCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 1795 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGG 282983 ||||||||||| ||||| || || || || |||||| ||| || || ||| Sbjct 1796 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGNTCAGGCGCTGCTGG 1846 >seq3874 Length=1858 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 1597 ACCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1656 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||| ||||| || || || || |||||||||| || || ||||| || Sbjct 1657 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 1716 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 1717 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 1776 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 1777 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1824 >seq3040 Length=2570 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | |||| || || |||||||||||||| || Sbjct 928 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 987 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 988 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 1047 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| Sbjct 1048 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 1107 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 1108 TCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1154 >seq3958 Length=1797 Score = 174 bits (192), Expect = 3e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | |||| || || |||||||||||||| || Sbjct 442 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 501 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 502 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 561 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| Sbjct 562 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 621 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATA 283106 ||||| | ||||||||| || || | ||||| ||||| || ||||| || ||| Sbjct 622 TCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCATGTTGATA 675 >seq207 Length=16371 Score = 172 bits (190), Expect = 1e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| ||| Sbjct 16146 CCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 16087 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||||| || || ||||| || Sbjct 16086 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 16027 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 16026 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 15967 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATAT 283107 || || | ||||||||| || |||| ||||| ||||| |||||||| | |||| Sbjct 15966 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGATGATAT 15912 Score = 170 bits (188), Expect = 4e-37 Identities = 172/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 282876 CCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGC 282935 || |||||||| || ||||| || | ||| || || |||||||||||||| |||||| Sbjct 16371 CCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGC 16312 Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995 |||||||| ||||| || || || || |||||||||| || || ||||| || || Sbjct 16311 GTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATG 16252 Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| ||||| || || || || Sbjct 16251 CCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCC 16192 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 16191 AGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 16148 >seq5767 Length=966 Score = 123 bits (136), Expect = 5e-23 Identities = 159/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || ||||||||||| |||||||| | || || || ||||||||||| || || ||| Sbjct 243 GAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTC 184 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| | || || ||||| ||||| || || || | ||||| |||| ||| |||||| Sbjct 183 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTCGAGAAG 124 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 || ||| ||| |||||||||| || |||||| | || || ||| || || || Sbjct 123 CACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACC 64 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||||||||| ||| ||| |||| || || ||||| Sbjct 63 AACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGC 26 >seq3519 Length=2121 Score = 123 bits (136), Expect = 5e-23 Identities = 159/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || ||||||||||| |||||||| | || || || ||||||||||| || || ||| Sbjct 1926 GAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTC 1867 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| | || || ||||| ||||| || || || | ||||| |||| ||| |||||| Sbjct 1866 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTCGAGAAG 1807 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 || ||| ||| |||||||||| || |||||| | || || ||| || || || Sbjct 1806 CACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACC 1747 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||||||||| ||| ||| |||| || || ||||| Sbjct 1746 AACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGC 1709 >seq2484 Length=3244 Score = 123 bits (136), Expect = 5e-23 Identities = 159/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || ||||||||||| |||||||| | || || || ||||||||||| || || ||| Sbjct 173 GAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTC 232 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| | || || ||||| ||||| || || || | ||||| |||| ||| |||||| Sbjct 233 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGGCTCGAGAAG 292 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 || ||| ||| |||||||||| || |||||| | || || ||| || || || Sbjct 293 CACTACAACGCCACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACC 352 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||||||||| ||| ||| |||| || || ||||| Sbjct 353 AACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGC 390 >seq84 Length=22863 Score = 96.9 bits (106), Expect = 7e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 || |||||||| ||||| | | || ||||| || || ||| | | |||||| Sbjct 12420 AGCTTCGTGAAGATGTAGCGCGGTGCGGCGTGGTCGTTACCCAGCTGCTGACGCGAACCG 12479 Query 273834 AACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||||||||| |||| ||| ||| |||||||| | ||| | | | ||| ||||| Sbjct 12480 AACTGACCCTCCGGCACGAGCAGGTTGATGTTGTTACCGCCGGTGAAGTTCTGCGCCATC 12539 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTG 273931 |||||||| ||| |||| || || |||||||||||||| Sbjct 12540 TTCACGATGGTCTCCTGCAGCGACACCTCGCCGTGGTG 12577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046641565401120