Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq207 152 4e-32 seq3874 145 5e-30 seq3958 141 7e-29 seq3898 141 7e-29 seq3040 132 3e-26 >seq207 Length=16371 Score = 152 bits (168), Expect = 4e-32 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| ||||| |||||| ||||||||||| || Sbjct 16150 CATGCCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 16091 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || |||||||||| |||||||| || | Sbjct 16090 CGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGG 16031 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| |||||| ||||| |||| | || |||||| | | Sbjct 16030 AGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCGATCGTGTCGCTCGCCT 15972 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||||||| || |||||||| || || || |||||||||||||| ||||||||| Sbjct 15971 CCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGATG 15916 Score = 145 bits (160), Expect = 5e-30 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| || || || ||| | || || Sbjct 16357 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 16298 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||||| |||||||| || | ||| | || ||||| ||| Sbjct 16297 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 16238 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||||| |||| | || |||||| | |||||||||| || ||||||| Sbjct 16237 GATCTTCGCCTTCAC-GTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCT 16179 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || |||||||||||||| |||||| Sbjct 16178 TGCCGGTCAGCGTCTTCACGAAGATCTGCATG 16147 >seq3874 Length=1858 Score = 145 bits (160), Expect = 5e-30 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| || || || ||| | || || Sbjct 1615 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 1674 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||||| |||||||| || | ||| | || ||||| ||| Sbjct 1675 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 1734 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | || |||||| | |||||||||| || ||||||| Sbjct 1735 GATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCT 1793 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || |||||||||||||| |||||| Sbjct 1794 TGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1825 >seq3958 Length=1797 Score = 141 bits (156), Expect = 7e-29 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| |||||| |||||| ||||||||||| || ||||| ||| | || || Sbjct 459 CACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 518 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | |||||||| || | || | || ||||| ||| Sbjct 519 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 578 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | ||||||||| | || ||||| | | ||||||| Sbjct 579 GATCTTCGCCTTC-ACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCT 637 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || |||||||||||||||||||||||| || Sbjct 638 TGCCGGTAAGGGTCTTCACGAAGATTTGCATGTTG 672 >seq3898 Length=1846 Score = 141 bits (156), Expect = 7e-29 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| ||||| |||||| ||||||||||| || || || ||| | || || Sbjct 1525 CACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 1584 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||||| |||||||| || | ||| | || ||||| ||| Sbjct 1585 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 1644 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | || |||||| | |||||||||| || ||||||| Sbjct 1645 GATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCT 1703 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || |||||||||||||| |||||| Sbjct 1704 TGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1735 Score = 140 bits (154), Expect = 2e-28 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||| ||||| ||||| |||||| ||||||||||| || Sbjct 10 CATGCCGCCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 69 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || |||||||||| |||||||| || | Sbjct 70 CGCAAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGG 129 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| |||||| |||| | |||| | || |||||| | | Sbjct 130 AGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCT 188 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| || | || |||||||| || || || |||||||||||||| ||||||||| Sbjct 189 CCACTTCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATG 244 >seq3040 Length=2570 Score = 132 bits (146), Expect = 3e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| |||||| |||||| ||||||||||| || ||||| ||| | || || Sbjct 945 CACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 1004 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | |||||||| || | || | || ||||| ||| Sbjct 1005 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1064 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | ||||||||| | || ||||| | | ||||||| Sbjct 1065 GATCTTCGCCTTC-ACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCT 1123 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || || |||||||||||||| |||||| || Sbjct 1124 TGCCGGTCAGCGTCTTCACGAAGATCTGCATGCTG 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359958459851760