Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20galati_20[genbank_20GCA_5F000482125.1_202013-10-25] 7,280 sequences; 27,235,000 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq207 183 3e-41 seq3874 178 1e-39 seq3040 176 4e-39 seq3898 172 5e-38 seq3958 161 9e-35 >seq207 Length=16371 Score = 183 bits (202), Expect = 3e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| |||||||| ||||||||| ||||| ||||| | Sbjct 16147 GCCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 16088 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || |||||||||||||| || || ||||||||||| ||||||| || Sbjct 16087 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 16028 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| | | |||||||||| |||||| Sbjct 16027 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 15968 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 15967 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 15919 Score = 176 bits (194), Expect = 4e-39 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 ||||| || || | |||||| |||||||| ||||||||| ||||| ||||| | || Sbjct 16371 CCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGC 16312 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||||| | || |||||||||||||| || || ||||||||||| ||||||| || | | Sbjct 16311 GTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATG 16252 Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCC 41818 | |||||||||| ||| || ||||| | | |||||||||| |||||||||| Sbjct 16251 CCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCC 16192 Query 41819 ACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 16191 AGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 16147 >seq3874 Length=1858 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||| |||||||| ||||||||| ||||| ||||| | Sbjct 1598 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 1657 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || ||||||||||| ||||||| || Sbjct 1658 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 1717 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | |||||||||| ||||||| Sbjct 1718 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 1777 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 1778 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1825 >seq3040 Length=2570 Score = 176 bits (194), Expect = 4e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | ||| || || |||||| ||||||||| ||||| ||||| | Sbjct 926 CGCCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 985 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| | || |||||||||||||||||||| || |||||||| ||||||| || Sbjct 986 CGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGG 1045 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | || |||||||||| ||| || ||||| | | |||||||||| ||| | Sbjct 1046 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGA 1105 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | | ||||| || || ||||||||||| ||||| ||||||||| Sbjct 1106 CCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1155 >seq3898 Length=1846 Score = 172 bits (190), Expect = 5e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 1508 CCACCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 1567 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || ||||||||||| ||||||| || Sbjct 1568 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 1627 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | |||||||||| ||||||| Sbjct 1628 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 1687 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 1688 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1735 Score = 165 bits (182), Expect = 8e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 13 GCCGCCGCGCAGGCGGAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 72 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || |||||||||||||| || || ||||||||||| ||||||| || Sbjct 73 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 132 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| | | |||||||||| |||||| Sbjct 133 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 192 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 193 TTCGAGCGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 241 Score = 100 bits (110), Expect = 3e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| |||||||| ||||||||| ||||| ||||| | Sbjct 1735 GCCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1794 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 || ||||| | || |||||||||||||| || || |||||||||| ||| Sbjct 1795 AAGCGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGNTCAGGCGCTGCTGG 1846 >seq3958 Length=1797 Score = 161 bits (178), Expect = 9e-35 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | ||| || || |||||| ||||||||| ||||| ||||| | Sbjct 440 CGCCACCGCGCAGGCGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 499 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| | || |||||||||||||||||||| || |||||||| ||||||| | Sbjct 500 CGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 559 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | || |||||||||| ||| || ||||| | | |||||||||| ||| | Sbjct 560 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGA 619 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | | ||||| || || || || ||||| ||||| || |||||||| Sbjct 620 CCTCGAGGGCGATCGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCATGTT 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462261930336000