Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4029 154 3e-32 seq1750 86.0 1e-11 >seq4029 Length=1979 Score = 154 bits (170), Expect = 3e-32 Identities = 317/466 (68%), Gaps = 9/466 (2%) Strand=Plus/Plus Query 230179 GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 230238 ||||| ||| ||| || | | || || || || | || ||||| ||||||||| Sbjct 1015 GAGCGCCTCATCGGCTTCGCGGCGGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCC 1074 Query 230239 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 230298 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 1075 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 1134 Query 230299 AGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAA-AGC----TC 230352 ||||||||||| || || || | | |||| | || | || ||| ||| || Sbjct 1135 TCGCGCGACGAGGGCCTGCA-CACCGACTTCGCCTGCCTGCTCTA--CAACAGCCACATC 1191 Query 230353 CAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAA 230412 || ||||||| || ||| || ||||| || || || || | | ||| Sbjct 1192 AAGCACAAGCTCCCGCGCGACCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAG 1251 Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATG 230472 ||||||||||| || ||||| | || || || || ||||||||||| || || ||| Sbjct 1252 AAGGAGTTCATCTGCGACGCGCTGCCGGTGCGTCTGATCGGCATGAACGCCGAGCTCATG 1311 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | ||||||||||| ||||| ||||||||| | | || | || || |||||| Sbjct 1312 AGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGCCTCGAGAAGCAC 1371 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 |||||||| | ||||||||| | || |||||| | || ||||| || ||||||||| Sbjct 1372 TACAACTCCACGAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACCAAC 1431 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 |||||||| ||| ||| | || || |||| | | || || |||| Sbjct 1432 TTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGCGGGCGTCATGA 1477 >seq1750 Length=4164 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 281739 TTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAAC 281798 ||||||||||| || | | |||||||| | || |||| | | ||| || ||| Sbjct 1808 TTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGCTGCCGAGCTGCTGACGCGAGCCGAAC 1867 Query 281799 TGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTG 281858 || |||||||||| | | ||| ||||| |||| ||| | | | ||| |||| ||| Sbjct 1868 TGGCCCTCCGGCACGAGCAGGTTGATGTTGTTGCCGCCGGTGAAGTTCTGCGCCATTTTG 1927 Query 281859 ACGATTGTCCCCTGAAGCGATACCTCACCGTGGTG 281893 ||||| ||| |||| ||||| ||||| |||||||| Sbjct 1928 ACGATGGTCTCCTGCAGCGACACCTCGCCGTGGTG 1962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057707088630380