Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4029 416 3e-111 seq990 167 2e-36 seq5997 161 1e-34 seq8454 154 2e-32 seq6152 154 2e-32 seq2387 147 2e-30 seq70 145 8e-30 >seq4029 Length=1979 Score = 416 bits (460), Expect = 3e-111 Identities = 619/866 (71%), Gaps = 24/866 (3%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || || ||||| || | |||| | |||||||| || | || ||| Sbjct 559 GAGCCGCTGCAGCAGGACAACCCGTATCGCTACGTGCTCTTCCCCATCCAGTTCCACGAC 618 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | ||||| Sbjct 619 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTC 678 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||| |||||||| ||| | | ||| ||||| || ||||||||| Sbjct 679 GGCAGCGACCTCGCCGACTGGGTCAAGCTC---AGCGAGGGCGAGCAGCACTTCATCAAG 735 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| ||||||| |||||||||||||||| |||||| || | || ||| Sbjct 736 CACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTCGTCGAGAACCTCGCCGTGCGC 795 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || |||| |||||||||| |||||||||||| ||| || ||| Sbjct 796 TTCATGACCGACGTCAAGGTCCCCGAGGCGCGCGCCTTCTACGGCTTCCAGCTCATGATG 855 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| || | || ||| || ||||||| ||| | | | | | | | Sbjct 856 GAGAACATCCACTCCGAGACCTACTCGGTGCTGCTCGACACCTACAT-CAC-CGACAGCG 913 Query 116933 --GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 |||||||| || || || ||||||| |||| || |||||| || | ||||||| | Sbjct 914 CCGAGAAGCTGCGCCTGCTGCACGCCATGCAGACCATCCCGTGCATCCAGAAGAAGGC-G 972 Query 116991 AG-TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| |||||||||||| |||| | ||| |||| |||||||| | | | Sbjct 973 AGCTGGGCCGTGCGCTGGATCG---GCAGCGGCGCCAGCTTCCAGGAGCGCCTCATCGGC 1029 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 |||||||| ||||||||| ||||||| || ||| ||| |||||| || ||||||||| Sbjct 1030 TTCGCGGCGGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAG 1089 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || |||||| | ||||||||||| || |||||||||||||||||||| | |||||||| Sbjct 1090 AAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGC 1149 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGC---AGCGACCGAGC 117223 ||||| |||||| ||||| |||| | ||| || | || ||| || || Sbjct 1150 CTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATCAAGCACAAGCTCCC--GC 1207 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 ||| | ||||| | ||| |||||||||| |||| ||||||| || ||| || | Sbjct 1208 GCGAC-CGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGC 1266 Query 117284 GAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 || |||||||||||||||||| | || | || ||| ||| || ||||||||| Sbjct 1267 GACGCGCTGCCGGTGCGTCTGATCGGCATGAACGCCGAGCTCATGAGCCAGTACATCGAG 1326 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403 |||||||||||| | ||||| | ||| | | || |||||||||||| | | ||| Sbjct 1327 TTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGCCTCGAGAAGCACTACAACTCCACGAAC 1386 Query 117404 CCGCTGGACTTTATGAACCTCATCTC 117429 || | ||||| ||| | | ||||| Sbjct 1387 CCCTTCGACTTCATGGAGATGATCTC 1412 >seq990 Length=6061 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| || ||||| || ||| || |||| ||||| || Sbjct 487 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCG 546 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | |||| | |||| || || | ||||| ||||||||||| |||| Sbjct 547 AGCGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 605 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||| Sbjct 606 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACACTCGCGGACTA 665 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | |||||||| || ||| ||||| || | ||||| Sbjct 666 CAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGCGG 716 >seq5997 Length=1133 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| || ||||| || ||| || |||| ||||| || Sbjct 365 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCG 424 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | |||| | |||| || || | ||||| ||||||||||| |||| Sbjct 425 AGCGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 483 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||| Sbjct 484 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTA 543 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | |||||||| || ||| ||||| | | ||||| Sbjct 544 CAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTCCGCGGCGG 594 >seq8454 Length=528 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || || | | Sbjct 74 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 133 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 134 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 192 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 193 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 252 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 253 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 301 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || || | | Sbjct 302 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 361 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 362 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 420 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 421 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 480 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || ||| ||||| || | ||||| Sbjct 481 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 528 >seq6152 Length=1087 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || || | | Sbjct 816 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 875 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 876 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 934 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 935 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 994 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 995 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1043 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || || | | Sbjct 25 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 84 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 85 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 143 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 144 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 203 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || ||| ||||| || | ||||| Sbjct 204 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 251 >seq2387 Length=3272 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || || | | Sbjct 106 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 165 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 166 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 224 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 225 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 284 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| |||||| | |||||||| || ||| ||||| || | ||||| Sbjct 285 CATCCAAAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 332 >seq70 Length=16190 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || || | | Sbjct 15974 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 16033 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 16034 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 16092 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 16093 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 16152 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | |||||||| || ||| ||||| Sbjct 16153 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGC 16189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515163646489760