Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1671 154 3e-32 seq4281 104 5e-17 >seq1671 Length=4299 Score = 154 bits (170), Expect = 3e-32 Identities = 552/847 (65%), Gaps = 22/847 (3%) Strand=Plus/Plus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | |||| ||||| | || || ||| | ||| | || | |||| | Sbjct 2041 CAGCACATGATTCTGCGTGTGGCGATTGGCATCCACGGCAAGGACCTCGACCGTGTGCGC 2100 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 ||||||||| ||| | ||| | || || || || ||||||||||||||| Sbjct 2101 CGCACGTACACCCTCATGTCGCAGGGCTTCTTCACCCACGCGACCCCGACGCTCTTCAAC 2160 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| ||| || ||| ||||||| ||||| || | || ||| | |||||| Sbjct 2161 GCCGGCACCCCTAAGCCGCAGATGAGCTCCTGCTTCCTCGTGGCGATGAAGGACGACAGC 2220 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGA 249132 | || ||||| || |||||||| || || ||| ||| || ||| ||||| Sbjct 2221 ATTGAGGGCATCTACGACACGCTCAAGGAGTGTGCGGTGATCAGCAAGGCCGCCGGCGGC 2280 Query 249133 ATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGG 249192 ||||| || ||| ||||||||| || || ||||| || || || || Sbjct 2281 ATCGGCATCCACGTGCACAACATCCGCGCCGCCGGCAGCTACATTGCCGGCACCAACGGC 2340 Query 249193 --GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCA 249250 ||| | || || | || | | || | | ||| ||| | | | || Sbjct 2341 ACGTCCA--ACGGCCTCATGCCGATGATCCGCGTGTGGAACAACACGGCCCGCTACGTCG 2398 Query 249251 ACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCG 249307 |||||| ||| | || ||||| | ||||| ||||| | || ||||||||||| Sbjct 2399 ACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCGATGTACCTCGAGCCGTGGCACGCCG 2458 Query 249308 ATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTG 249367 | | || ||||||||| |||| |||| ||||| || | | | ||||| | Sbjct 2459 ACGTCTTCGAGTTCCTGCTGATGAAGCGCAACACGGGCAAGGACGACCAGCGCGCGCGCG 2518 Query 249368 ACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCG 249427 |||||||||||| ||||||| || ||||| | |||||| ||||||||| ||| ||| Sbjct 2519 ACCTCTTCTACGCCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCAAGAGCGAGGGCA 2578 Query 249428 ATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTAC-ACGGCGCCGAC 249486 | |||||||| | || | | |||||| ||||| ||| || | |||||| || Sbjct 2579 AGTGGACGCTGATGGACCCCAACACCACCCCGGGCCTCAGCGA-CTGCTACGGCGAGGAG 2637 Query 249487 TTCGACCAAGC-CTATAAGAAATACGAATCCAACGGCAT---CGGCAAGACAATCAAGGC 249542 ||||| |||| || || | ||||| | |||||| || | || ||| |||| Sbjct 2638 TTCGA-GAAGCTTTACGAGGACTACGAGGCGCGCGGCATGGGCGTCCGCACCATCCAGGC 2696 Query 249543 TC-GGA-CCCT-TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTA 249599 | ||| | || || || | | | ||||||||||| ||||| || | ||| | | | Sbjct 2697 GCAGGAGCTCTGGTTCGCCA---TCATCGAGTCCCAGATCGAGACGGGCGTGCCCT-TCA 2752 Query 249600 T-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCT 249658 | |||| ||| ||||| ||||||| ||| ||||| | | ||||| |||||| | Sbjct 2753 TGTTGTACAAGGACGCCTGCAACGAGAAGTCGAACCAGAAGAACCTTGGCACCATCAAGT 2812 Query 249659 CGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCA 249718 || || || || | ||| | || | ||| | || |||||||| || || |||| Sbjct 2813 GCTCCAACCTGTGCACCGAGATTATCGAGTACACCTCGCCGGAGGAGACGGCGGTGTGCA 2872 Query 249719 ACCTGGC 249725 ||||||| Sbjct 2873 ACCTGGC 2879 >seq4281 Length=1834 Score = 104 bits (114), Expect = 5e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 ||||| || || ||| | |||||||||||||||||| | || ||||||||||| | Sbjct 559 CCGCCCTTTAAACTCATCATCCTGGACGAGGCGGACGCGCTGCTCCCCGACGCGCAGGCG 618 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 || |||||||| | ||||||| | || || ||||| |||||| | |||||||| Sbjct 619 GCGCTCCGCCGCATGATGGAGGACTTCAGCGAGGTCACGCGCTTTTGCATCCTGTGCAAC 678 Query 254325 TACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCA 254382 ||||| | || ||||||| ||| | || || ||||||||||| || ||| || Sbjct 679 TACGTCAGCCG--CATCATCGACCCCATTGCCAGCCGCTGCGCCAAGTTCCGCTTCCGCC 736 Query 254383 CCCTCGCGCCCAAGTCGATG 254402 | |||| || ||| || || Sbjct 737 CGCTCGTGCAGAAGGCGCTG 756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073647726666368