Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4029 163 4e-35 seq1671 104 3e-17 >seq4029 Length=1979 Score = 163 bits (180), Expect = 4e-35 Identities = 307/440 (70%), Gaps = 16/440 (4%) Strand=Plus/Plus Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| || || |||||||||||||| | ||| | || ||| |||||||| |||||||| Sbjct 1030 TTCGCGGCGGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAA 1088 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| | |||||||| || || ||| |||||| | || || || |||||||| Sbjct 1089 GAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGG 1148 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC-AGAT 125613 ||| ||| ||||| ||| | | ||| | |||| | | | | | || | || | Sbjct 1149 CCTGCACACCGACTTCGCC-TGC--CTGCTCTACAAC-AGCCACAT--CAAGCACAAGCT 1202 Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 || ||| || || || ||| | ||||| ||||| || || | ||||| Sbjct 1203 CCCGCG-CGACCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCA 1261 Query 125674 TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACA 125733 | ||| | || ||||| | |||| ||||||||| | |||| ||| || |||||| Sbjct 1262 TCTGCGACGCGCTGCCGGTGCGTCTGATCGGCATGAACGCCGAGCTCATGAGCCAGTACA 1321 Query 125734 TAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---AAGATTTACAACG 125790 | ||||| || || || || || || || || | | |||| | ||| |||||| Sbjct 1322 TCGAGTTCGTCGCCGACCGCCTGCT---CGTGTCGCTCGGCCTCGAGAAGCACTACAACT 1378 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 ||| ||| ||||| || |||||| | || || || || ||||||||||| |||| Sbjct 1379 CCACGAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACCAACTTCTTCG 1438 Query 125851 AGAAGAAGGTCAGCGAGTAC 125870 ||||||||||| |||||||| Sbjct 1439 AGAAGAAGGTCGGCGAGTAC 1458 >seq1671 Length=4299 Score = 104 bits (114), Expect = 3e-17 Identities = 381/586 (65%), Gaps = 22/586 (4%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| ||| ||||| |||| ||| || | ||| || | | | || Sbjct 2332 ACCAACGGCACGTCCAACGGCCTCATGCCGATGATCCGCGTGTGGAACAACACGGCCCGC 2391 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||| ||| || ||||| | || | ||| | || || ||| Sbjct 2392 TACGTCGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCGATGTACCTCGAGCCGTGG 2451 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||| ||||| || || || | |||| ||||| | | ||| || || Sbjct 2452 CACGCCGACGTCTTCGAGTTCCTGCTGATGAAGCGCAACA---CGGGCAAGGACGACCAG 2508 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| | || || || || ||| | || || | ||||||||||||||||| Sbjct 2509 CGCGCGCGCGACCTCTTCTACGCCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCAAG 2568 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| | |||| || ||| |||| || | | || || || ||| |||| Sbjct 2569 AGCGAGGGCAAGTGGACGCTGATGGACCCCAACACCACCCCGGGCCTCAGCGACTGCTAC 2628 Query 97104 GGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCG-ATA--CGTG 97157 ||||| ||||| ||| ||| ||| || ||||||| | | || | || ||| Sbjct 2629 GGCGAGGAGTTCGAG---AAGCTTTACGAGGACTACGAG---GCGCGCGGCATGGGCGTC 2682 Query 97158 AG-ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 | || | || | || | || || ||| |||||| | | | ||| | ||||| || Sbjct 2683 CGCACCA-TCCAGGCGCAGGAGCTCTGGTTCGCCATCATCGAGTCCCAGATCGAGACGGG 2741 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGG 97275 || | ||| | |||||||| || || | || | | ||||| || | | Sbjct 2742 CGTGCCCTTCATGTTGTACAAGGACGCC-TGCAACGAGAAGTCGAACCAGAAGAACCTTG 2800 Query 97276 GCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGA 97335 ||||||||||| ||||||| |||||||| || ||| | |||||| |||| ||||| |||| Sbjct 2801 GCACCATCAAGTGCTCCAACCTGTGCACCGAGATTATCGAGTACACCTCGCCGGAGGAGA 2860 Query 97336 CGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 |||| || ||| ||||| || || || |||||||||| || Sbjct 2861 CGGCGGTGTGCAACCTGGCCTCCATCGCGGTGTCCAAGTTTGTGGA 2906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740979295291760