Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq646 107 2e-18 seq226 93.3 5e-14 >seq646 Length=7487 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 126180 GGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 |||| | ||||| || | || || |||||||| |||| || |||||| || ||||| Sbjct 2632 GGTGAAGATGTAACGCGCGGCGGCGTGGTCCTTGCCGCCCTGCAGCCGCGTACCGAACTG 2573 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 |||||| ||| || || |||| |||||| |||||||||| ||| || | || Sbjct 2572 ACCGTCGGGCCGCAGCAGGGGCACGTTGTTGCTGCCCACAAAGTTCTGTGCCATGCCAAC 2513 Query 126300 AATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCC 126359 ||||||| | || |||||||||||| | |||| ||| ||||| | ||||||||| Sbjct 2512 GATGGTCTGGATGAGCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGACACGTAGCC 2453 Query 126360 GCTCAGCTGCGCAACCTTGATA 126381 | |||||| | || || ||| Sbjct 2452 GGAGAGCTGCACGACTTTAATA 2431 >seq226 Length=11248 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/149 (76%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 15050 CCCGAGATTGGCGACAAGTTTTGCT-CTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 ||| | |||||||||||||| ||| | || | || ||||||||| ||| |||||| Sbjct 10013 CCCAACATTGGCGACAAGTTCTGCAGCCGGCACGG-GCAAAAGGGTACGAACGGCATCCA 10071 Query 15109 TTTCCCCCAGGAAGACATGCCCTTTA-CCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 || | ||||||||| ||||||| | ||||| | ||||| || ||| | ||||||| Sbjct 10072 GTTTCGGCAGGAAGACCTGCCCTTCAACCGCGAC-GGCATCGTCCCGGACCTGATCATCA 10130 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGACC 15196 |||| || |||||||||||| |||||| Sbjct 10131 ACCCGCACGCCATCCCGTCCCGGATGACC 10159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611326076657600