Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1671 111 1e-19 seq2387 87.8 2e-12 seq990 84.2 2e-11 seq6152 82.4 6e-11 >seq1671 Length=4299 Score = 111 bits (122), Expect = 1e-19 Identities = 277/413 (67%), Gaps = 17/413 (4%) Strand=Plus/Minus Query 129990 CATCAAACTCCACATTCCATCCGCT-TCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 ||||| ||||| | || || ||| | ||| || ||||| || | ||||| | ||||| Sbjct 2592 CATCAGCGTCCACTTGCCCTC-GCTCTTGACGCGCTTCATGAAGAGGTCGGGGATCCACA 2534 Query 130049 GGGCGTACAACAAATCTCGCGC----TTTTCTATCCTCGGCACCCATGTTACGTTTCAGT 130104 ||||||| || | || ||||| | || |||| | ||| |||| || |||| Sbjct 2533 GGGCGTAGAAGAGGTCGCGCGCGCGCTGGTCG-TCCTTG---CCCGTGTTGCGCTTCA-- 2480 Query 130105 TCA--AGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCT 130162 ||| ||||| ||| | | ||||||||||||||| || | || || || | ||||||| Sbjct 2479 TCAGCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTACATCGCGAAGGCGCCCT 2420 Query 130163 TCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTG 130219 | || || ||| || ||||| |||| ||| | | ||||| | || || | ||| | Sbjct 2419 TGCGCTTACCGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCG 2360 Query 130220 CCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGT 130279 | | ||||||| ||||||||| |||| ||||| | ||||| || || | || Sbjct 2359 GCATGAGGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTAGCTGCCGGCGGCGCGGATGT 2300 Query 130280 TATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCG 130339 | || ||| | || ||||||||| | || |||| ||| || || |||| Sbjct 2299 TGTGCACGTGGATGCCGATGCCGCCGGCGGCCTTGCTGATCACCGCACACTCCTTGAGCG 2240 Query 130340 TTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAG 130392 | || || ||||| | || ||||| || || || | |||||| || ||| Sbjct 2239 TGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATCGCCACGAGGAAGCAGGAG 2187 >seq2387 Length=3272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 106 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 165 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| || || || || || Sbjct 166 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 225 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| || | || |||||| Sbjct 226 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 285 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | || | || |||| ||||||| ||| Sbjct 286 ATCCAAAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGT 333 >seq990 Length=6061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | ||||| || ||| || | || || || || | Sbjct 487 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCG 546 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || | | || || || || ||||||||||| || || || || Sbjct 547 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 606 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | ||||| |||||| || | || ||| Sbjct 607 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACACTCGCGGACTAC 666 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || || | || | || |||| ||||||| ||| Sbjct 667 AACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGCGGT 717 >seq6152 Length=1087 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 25 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 84 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| || || || || || Sbjct 85 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 144 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| || | || |||||| Sbjct 145 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 204 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | || |||| ||||||| ||| Sbjct 205 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGT 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419683874257690