Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4029 161 2e-34 seq646 134 3e-26 >seq4029 Length=1979 Score = 161 bits (178), Expect = 2e-34 Identities = 278/402 (69%), Gaps = 5/402 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| || ||||| | ||||||||||||||||||||| ||| Sbjct 1439 TCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTCGTG 1380 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| |||| || | |||| | |||||| || || ||||| | Sbjct 1379 GAGTTGTAGTGCTTCTCGAGGCCGAGCGACACGAGCAGGCGGTCGGCGACGAACTCGATG 1320 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || | ||||||||| |||| ||| || | || || |||||| Sbjct 1319 TACTGGCTCATGAGCTCGGCGTTCATGCCGATCAGACGCACCGGCAGCGCGTCGCAGATG 1260 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| ||| || | || || || | || || ||| | | | | ||| Sbjct 1259 AACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCGAGCACGCGGTCGCGCGGGAGC 1200 Query 251803 TTGTTCTCCA----GCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | ||| | ||| || || | | || | |||||| |||||||| Sbjct 1199 TTGTGCTTGATGTGGCTGT-TGTAGAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTC 1141 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||| | ||||| |||||||| || || ||| ||||||| Sbjct 1140 GCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCGCGCTTCTTGAGCCA 1081 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| ||||| ||||| || ||||| | | |||||||| Sbjct 1080 GAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGAC 1039 >seq646 Length=7487 Score = 134 bits (148), Expect = 3e-26 Identities = 215/304 (71%), Gaps = 10/304 (3%) Strand=Plus/Plus Query 218527 GACAAGGAGCTCATTCT--TTTC--TCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGT 218582 || |||||||||||||| |||| |||| | || ||||| || || || |||| Sbjct 2306 GATAAGGAGCTCATTCTCTTTTCCATCGCCGACTGC----GAGCGCTCGATCCCGAGCGC 2361 Query 218583 GGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCT 218642 | | || ||| ||||||| ||||| |||||||||||| || | ||||| ||||| Sbjct 2362 GATCGACGGCTTCAAGCCTGGCCAGCGCAAGATCCTCTTTTCCTGCCTGAAGCGCAACCT 2421 Query 218643 GGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCA 218702 ||| ||||| |||| ||| | || || || || || || || | |||||| Sbjct 2422 CACCAAAGCTATTAAAGTCGTGCAGCTCTCCGGCTACGTGTCGGAGCACTCCGCCTACCA 2481 Query 218703 TCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 ||||| |||||| || || | |||| || |||||||||||| ||| |||||||| Sbjct 2482 CCACGGCGAGCAGTCGCT-CATCCAGACCATCGTTGGCATGGCACAGAACTTTGTGGGCA 2540 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAA 218821 | |||||| || | |||||| ||| |||||||||| ||| | || || ||| || | Sbjct 2541 GCAACAACGTGCCCCTGCTGCGGCCCGACGGTCAGTTCGGTACGCGGCTGCAGGGCGGCA 2600 Query 218822 AGGA 218825 |||| Sbjct 2601 AGGA 2604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027723202834466