Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1671 495 7e-135 seq4029 416 5e-111 >seq1671 Length=4299 Score = 495 bits (548), Expect = 7e-135 Identities = 1199/1786 (67%), Gaps = 82/1786 (5%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGG-GTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| |||||| || || || || |||||| ||| | |||||||||||||| ||||| Sbjct 3800 ACGGTGAACTTGATGGCGTCCG-CGGCGGGGCGGGTGCGGAGGTAGTACATGCCCGTCTT 3742 Query 243796 GAGTCCACTGGACC---AGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTT 243852 ||| || ||||| || ||||| |||||| | ||| | || | ||| | Sbjct 3741 GAGCCC---GGACCTCCAGCAGTGGAAGTGCATCGACGTGATCTGGCCC-----GAG--T 3692 Query 243853 TGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCG 243912 |||| || |||| || |||||||| | ||||| |||||| | | | | || Sbjct 3691 TGGG--GTTCTCG---AGGAAGAGGTTCATCGACTGCGACTGGTCAATGTACTTGCCGCG 3637 Query 243913 CTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 | || |||||| ||||||| ||| || ||||| || | || ||| | | Sbjct 3636 GGCGGCCGCCATGTCGATGAGGGTGCGCTGCGAGATCTCCCACACGGTGCGGTACA---G 3580 Query 243973 CTTG---AGGTGCTCGGGGAAC-CCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGA 244028 || | |||| |||||||| || || | | |||||| || || ||| | ||||| Sbjct 3579 CTCGCGCAGGTCCTCGGGGATGTCCATC-ACATGCTGCACAGACCCGTTGAAGGTGATGA 3521 Query 244029 GCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCG---ACCAGGT 244085 || | | || || || ||| ||||||||||| |||| | ||| ||||||| Sbjct 3520 TCTCGTTCCGGATTTTGTCGCTCCACAGGCCC---CGCTTGATGAGGTCGGTCACCAGGT 3464 Query 244086 GCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGA 244145 | |||||||||| | ||||| || |||||||||||| ||||| |||| | ||| Sbjct 3463 ACTTGTTCACCACGGGGAACTCGCCGCTCAGCACGCGGCGGACGTAGATGTTGGAGGTGA 3404 Query 244146 GCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG 244205 ||||||| || ||| ||||||| || ||||||| || || || ||||| |||| Sbjct 3403 AGGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGAGGCTGTGGGCATCGGCG 3344 Query 244206 ACACCAGCAGACTGTTCCTCACGCCGTGCCTC-TGGATGCGGAGTCTGAGCTCGTTCCAG 244264 | ||||| ||| | || |||| |||| || ||| |||| ||| |||| Sbjct 3343 CGAGGAGCAGCGAGTTGCGCATGCCG-ACCTCGACGACGCGCTTCTTGAGGGCGTCCCAG 3285 Query 244265 TCCCACATGCCCGAGAGGTCCTC-GCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCC 244323 | ||| ||| | || || |||| | | ||||| ||| ||||| ||| | || Sbjct 3284 TTCCAGCGGCC-----GCTCTTCGGCGTCT--CGTGCCACAGGTCGAACTGGAGCTGGCC 3232 Query 244324 CTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT-TAC 244382 ||| | |||||||| ||| | ||||| ||| || || || | |||||| | || Sbjct 3231 CTTTGAGGCGGGGCTGTCCTTGAAGGTCTCGTACGGTCCCTCCACCGCGGCCAGGTCCAC 3172 Query 244383 AGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGG 244442 | | || | |||||||||||| |||||||||||||| || ||| | | | | Sbjct 3171 GGAGGAC-TCCACGGCGGCGTAGTAAATGGTCTCGAAGATGTCCTCGTTGAGCTGCTGCG 3113 Query 244443 CCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 ||| || ||||||||| | || | || |||| |||| || || |||||||||| Sbjct 3112 CCTCCGGGCTGGTGAAGGGCAGGCGGAGCAGGCAGAAGGCGTCCGCGAGGCCCTGCACGC 3053 Query 244503 CGATGCCGATGGGTCTGTGTCGC---TTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAA 244559 ||| ||||| || | || ||| ||| || |||| || |||| |||||||| Sbjct 3052 CGAGGCCGACCGGGCGGTTGCGCATGTTGCTGCGGCGCGCGGTTTCG---ACGGGGTAGT 2996 Query 244560 AGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA--TCATGCGGACGACGTCGGCCAG 244617 |||| | ||| || || ||| |||||| | |||| || | || || ||| ||| Sbjct 2995 AGTTCCGGTCAATGACGCGGTTCAGGTTGAGCGTGATCTCCTTCG--TCACCTCGTACAG 2938 Query 244618 CAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAG 244677 |||||| |||| |||||| || || ||| ||| |||||||| | | Sbjct 2937 CAGCTGGTGGTCGAACTCGT-----TCTTC-GCG-CGGT-----CCACAAACTTGGACAC 2890 Query 244678 GGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTC 244737 |||| | |||||||||||| || ||| |||||||| |||||||| || |||||| Sbjct 2889 CGCGATGGAGGCCAGGTTGCACACCGCCGTCTCCTCCGGCGAGGTGTACTCGATAATCTC 2830 Query 244738 GGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCA 244797 |||||| ||||| ||||||||||||||| |||| || || || ||||| ||||||| Sbjct 2829 GGTGCACAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTCGACTTCTCGTTGCA 2770 Query 244798 GGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTT 244857 |||||||||||| | |||||||||| | || ||||||| ||||| ||| || | | Sbjct 2769 GGCGTCCTTGTACAACATGAAGGGCACGCCCGTCTCGATCTGGGACTCGATGATGGCGAA 2710 Query 244858 CCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTA 244917 |||||| ||| |||| || || | | || |||| ||||||||| ||| Sbjct 2709 CCAGAGCTCCTGCGCCTGGATGGTGCGGACGCCCATGCCGCGCGCCTCGTAGTCCTCGTA 2650 Query 244918 CAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACAT 244977 || ||||||||| ||| || ||| ||||| ||| | ||| ||| Sbjct 2649 AAGCTTCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGGTGGTGTTGGGGTCCAT 2590 Query 244978 GAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGC 245037 || |||||| ||| || |||||| | || ||||||||||||||||||||| ||||| Sbjct 2589 CAGCGTCCACTTGCCCTCGCTCTTGACGCGCTTCATGAAGAGGTCGGGGATCCACAGGGC 2530 Query 245038 CTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTT---CTTCCTCAGCTCCAA 245094 | ||||||||| | | | ||| |||||| ||| ||||| |||| |||| || Sbjct 2529 GTAGAAGAGGTCGCGCGCGCGCTGGTCGTCCTTGCCCGTGTTGCGCTTCATCAG---CAG 2473 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 || || ||||||||| ||||||| ||||| | ||| | |||| |||||| ||||| Sbjct 2472 GAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTACATCGCGAAGGCGCCCTTGCGCTT 2413 Query 245155 GTTGCCTCCCTGGTCCACCATCCTCTCGAG-CGCGTTG---AAGATGCGCAGGGTAGGCA 245210 ||| |||||||| | | | || | || |||| | | ||| | | |||| Sbjct 2412 ACCGCCGCCCTGGTCGA----CGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCA 2357 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 | |||||| || |||||||||||| |||||| ||| | | | || |||| Sbjct 2356 TGAGGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTAGCTGCCGGCGGCGCGGATGTTGT 2297 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 | | ||||| | ||||||||| |||| ||| | || || ||||| |||| Sbjct 2296 GCACGTGGATGCCGATGCCGCCGGCGGCCTTGCTGATCACCGCACACTCCTTGAGCGTGT 2237 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| |||||||| |||||| | || ||||||||| || ||| | Sbjct 2236 CGTAGATGCCCTCAATGCTGTCGTCCTTCATCGCCACGAGGAAGCAGGAGCTCATCTGCG 2177 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 |||| ||| ||| | |||||| || || ||| | |||||||| ||| ||| ||| | Sbjct 2176 GCTTAGGGGTGCCGGCGTTGAAGAGCGTCGGGGTCGCGTGGGTGAAGAAGCCCTGCGACA 2117 Query 245451 GGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 || |||||| || ||| | ||||| || | ||||||||| Sbjct 2116 TGAGGGTGTACGTGCGGCGCACACGGTCGAGGTCCTTGCCGTGGAT 2071 >seq4029 Length=1979 Score = 416 bits (460), Expect = 5e-111 Identities = 618/866 (71%), Gaps = 13/866 (2%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || ||| ||||||||| || ||||||| || | || || || |||||| Sbjct 604 ATCCAGTTCCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTG 663 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAA--CGAAA 42402 |||||||| ||||| | || ||| |||| ||||| ||| || | || ||| Sbjct 664 GAGGAGATCGACCTCGGCAGCGACCTCGCCGACTGGG--TCAAGCTCAGCGAGGGCGAGC 721 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 || ||| |||| || | || ||||||||||||| | |||||||| ||| |||| Sbjct 722 AGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTCGTCGAGA 781 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| ||| | ||||||| || || || | ||||||||| ||||||||||| Sbjct 782 ACCTCGCCGTGCGCTTCATGACCGACGTCAAGGTCCCCGAGGCGCGCGCCTTCTACGGCT 841 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||| | || |||||| | ||||| ||| ||| | |||||| |||| |||| Sbjct 842 TCCAGCTCATGATGGAGAACATCCACTCCGAGACCTACTCGGTGCTGCTCGACACCTACA 901 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || || || |||| | ||| | | |||||| |||| || || |||||| Sbjct 902 TCACCGACAGCGCCGAGAAGCTGCGCCTGCTGCACGCCATGCAGACCATCCCGTGCATCC 961 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 ||||||||||| |||||| | |||||||| || || ||| | ||| ||| Sbjct 962 AGAAGAAGGCGAGCTGGGCCGTGCGCTGGATCGGCAG---CGGCGCCAGCTTCCAGGAGC 1018 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | || | | ||| | || |||||||||||||||||||| ||| ||||| | |||||| Sbjct 1019 GCCTCATCGGCTTCGCGGCGGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCT 1078 Query 42763 TCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 ||||||||||| || || || ||||||||| ||||||||| ||||| |||||| Sbjct 1079 TCTGGCTCAAGAAGCGCGGCGT-GATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCG 1137 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | |||||||| ||||| | ||||| |||||||| || | | |||||| ||| |||| Sbjct 1138 CGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATCAAGCAC 1197 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 |||| | || || || || | ||||||||||| || ||||| | |||||||||||| Sbjct 1198 AAGCTCCCGCGCGACCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAG 1257 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 ||| || | ||||||| ||| ||| ||||||||||| ||| |||||| || || Sbjct 1258 TTCATCTGCGACGCGCTGCCGGTGCGTCTGATCGGCATGAACGCCGAGCTCATGAGCCAG 1317 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC-AGCCGCCTCTACA 43059 |||||| ||| ||||||||||| || || ||| | | | || ||| || | | ||||| Sbjct 1318 TACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTC-GCTCGGCCTCGAGAAG-CACTACA 1375 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 || | || |||||||||||| ||||||| |||||| | |||||||||||||| | Sbjct 1376 ACTCCACGAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACCAACTTCT 1435 Query 43120 TCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| |||| ||| |||||| Sbjct 1436 TCGAGAAGAAGGTCGGCGAGTACCAG 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944237376625760