Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1671 181 1e-40 seq4029 122 1e-22 seq1892 84.2 3e-11 >seq1671 Length=4299 Score = 181 bits (200), Expect = 1e-40 Identities = 843/1318 (64%), Gaps = 34/1318 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| ||| | ||||| |||||||| ||||| || | ||| || | ||| ||| Sbjct 3419 TAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGAG 3360 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 ||||||||||| || || | ||| || ||| || | || || | ||| | | Sbjct 3359 GCTGTGGGCATCGGCGCGAGGAGCAGCGAGTTGCGCATGCCGACCTCGACGACGCGCTTC 3300 Query 114062 TTGAGGGCGTCCCAGT---CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 114118 |||||||||||||||| | | | ||| | | | | ||||||| || |||||| Sbjct 3299 TTGAGGGCGTCCCAGTTCCAGCGGCCGCTCTTCGGCGTCTCGTGCCACAGGTCGAACTGG 3240 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCC 114178 || || | ||||| || ||| || |||||||| || ||||| ||| | ||| Sbjct 3239 AGCTGGCCCTTTGAGGCGGGGCTGTCCTTGAAGGTCTCGTACGGTCCCTCCACCGCGGCC 3180 Query 114179 AATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 | | ||||| | ||| | ||| |||| || || ||||| || ||| | || Sbjct 3179 AGGTCCACGGAG---GACTCCACGGCGGCGTAGTAAATGGTCTCGAAGATGTCCTCGTTG 3123 Query 114236 ATTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 114293 | || ||||| ||| | || | || ||| || || | ||||||| Sbjct 3122 AGCTGCTGCGCCTC--CGGGCTGGTGAAGGGCAGGCGGAGCAGGCAGAAGGCGTCCGCGA 3065 Query 114294 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA 114353 | || || || |||||||| | ||||| | | ||| || || ||||| || | Sbjct 3064 GGCCCTGCACGCCGAGGCCGACCGGGCGGTTGCGCATGTTGCTGCGGCGCGCGGTTTCGA 3005 Query 114354 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 114413 |||| || | |||| || || || | || || || |||| |||| || | | Sbjct 3004 CGGGGTAGTAGTTCCGGTCAATGACGCGGTTCAGGTTGAGCGTGATCTCCTTCGTCACCT 2945 Query 114414 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 114473 | | ||| | || || || | || | | ||| |||| | | |||| Sbjct 2944 CGTACAGCAGCTGGTGGTCGAACTCGTTCTTCGCGCGGTCCACAAACTTGGACACCGCGA 2885 Query 114474 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 114533 | || ||||| || ||||| | ||||| ||| |||||||| ||||| || || | Sbjct 2884 TGGAGGCCAGGTTGCACACCGCCGTCTCCTCCGGCGAGGTGTACTCGATAATCTCGGTGC 2825 Query 114534 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 114593 ||| || || | ||| |||||||| | |||||| || || ||||| ||| || || | Sbjct 2824 ACAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTCGACTTCTCGTTGCAGGCGT 2765 Query 114594 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 114653 ||||||| | |||| | ||| |||||||| | ||||||| || || || ||||| Sbjct 2764 CCTTGTACAACATGAAGGGCACGCCCGTCTCGATCTGGGACTCGATGATGGCGAACCAGA 2705 Query 114654 -CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC-CTCCTCGTACTTTGTGTAGAG 114711 | | ||| |||| | || ||| || | || | | ||||||| | ||| || Sbjct 2704 GCTCCTGCGCCTGG-ATGGT-GCGGACGCCCATGCCGCGCGCCTCGTAGTCCTCGTAAAG 2647 Query 114712 GGCTTCAAACTCTTCACC--CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAG 114769 || ||||| || || | | | ||||| |||| || | | | ||| | Sbjct 2646 CTTCTCGAACTCCTCGCCGTAGCAGTCGCTGAG-GCCC-GGGGTGGTGTTGGGGTCCATC 2589 Query 114770 AGAGACCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || | ||| ||| || | || || || ||||||||||||||||| |||||||| || || Sbjct 2588 AGCGTCCACTTGCCCTCGCT-CTTGACGCGCTTCATGAAGAGGTCGGGGATCCACAGGGC 2530 Query 114829 TGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAA 114886 ||||||| || || ||| ||| || || | ||| ||| | || | || Sbjct 2529 GTAGAAGAGGTCGCG--CGCGCGCTGGTCGTCCTTGCCCGTGTTGCGCTTCATCAGCAGG 2472 Query 114887 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---A 114943 || || | || || ||||||||||| || ||||||| ||||| | ||||| || | Sbjct 2471 AACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTACATCGCGAAGGCGCCCTTGCGCTTA 2412 Query 114944 CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATA 115003 | || |||||| || || | || ||| || | ||||| | ||| || |||| Sbjct 2411 CCGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGG 2352 Query 115004 CCATCAGATTGGCCATTTGTCCCCCGAATACGAGACT--TATTGGCTCTGACATCATGGA 115061 || | || ||| || || || ||| | || ||| | || | || | Sbjct 2351 CCGTTGGACGTGCCGTTGGTGCCGGCAAT--GTAGCTGCCGGCGGCGCGGATGTTGTGCA 2294 Query 115062 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 115121 ||| || || || || || || ||| ||| ||| |||||| |||| || ||| Sbjct 2293 CGTGGATGCCGATGCCGCCGGCGGCCTTGCTGATCACCGCACACTCCTTGAGCGTGTCGT 2234 Query 115122 AGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCC 115181 |||| || || || ||| |||| | || | ||||||||| ||| || ||| Sbjct 2233 AGATGCCCTCAATGCTGTCGTCCTTCATCGCCACGAGGAAGCAGGAGCTCATCTGCGGCT 2174 Query 115182 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 115239 | || || || ||||||||||| || || ||||||||| |||| | || || ||||| Sbjct 2173 TAGGGGTGCCGGCGTTGAAGAGCGTCGGGGTCGCGTGGGTGAAGAAGCCCTGCGACAT 2116 >seq4029 Length=1979 Score = 122 bits (134), Expect = 1e-22 Identities = 347/527 (66%), Gaps = 10/527 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| ||||||||||||||| ||||| ||| | ||| ||||||| Sbjct 1458 GTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTCCAT 1399 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-ACCCCAATCTGTTTGAGGAGAC 125876 || || || |||||| | ||||| | | || | | || | | ||| || | Sbjct 1398 GAAGTCGAAGGGGTTCGTGGAGTTGTAG-TGCTTCTCGAGGCCGAGCGACACGAGCAGGC 1340 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | || | |||| |||| ||||||| ||| ||| | |||||| ||||| || Sbjct 1339 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGGCGTTCATGCCGATCAGACGCA 1280 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 || |||||||| |||||||| ||||||| || | ||||| || | ||||||| Sbjct 1279 CCGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCGA 1220 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTCCACGGCAAAC 126052 | | | ||| | | | || ||| | || ||| |||| ||| || Sbjct 1219 GCACGCGGTCG-CGCGGGAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAGGCGAAG 1161 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| || |||||||| || |||||||| || || |||| || || ||||| Sbjct 1160 TCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATC 1101 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 | || |||||||| | |||||| || || || || || || ||||||||||| ||||| Sbjct 1100 ACGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCG 1041 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTC 126232 || |||||| | | ||| ||||| ||| | ||| | || | | ||| | Sbjct 1040 ACCGCCGCGAAGCCGATGAGGCGCTCCTGGAAGCTG-GCGCC--GCTGCCGATCCAGCGC 984 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 | ||||| |||||| |||| ||| ||||||| |||||| || || Sbjct 983 ACGGCCCAGCTCGCCTTCTTCTGGATGCACGGGATGGTCTGCATGGC 937 >seq1892 Length=3957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 10780 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 10839 |||||| || || ||||| || | |||| |||||||| ||| ||||| || ||||||| Sbjct 2375 GATCTTGCGGTCGAAGCGGCCGGAGCGGGTGAGGGCGTTGTCGAGGATGTCCGTGCGGTT 2434 Query 10840 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTC 10890 ||||||||||| || | |||||||| ||| | ||||| |||| ||| Sbjct 2435 CGTCGCCGCGAGCACGATGATGCCCGAGGCGTCCTTGAAGCCGTCCAGCTC 2485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597289190348080